RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 LAMP3Q9UQV4 416 aa10.58□□□□□ -0.72
VPS52-220ENST00000493674 FBN2P35556 2912 aa10.57□□□□□ -0.72
VPS52-220ENST00000493674 NOTCH2Q04721 2471 aa10.57□□□□□ -0.72
VPS52-220ENST00000493674 IGKV1D-8A0A087WSZ0 117 aa10.57□□□□□ -0.72
VPS52-220ENST00000493674 NAP1L6A6NFF2 107 aa10.57□□□□□ -0.72
VPS52-220ENST00000493674 TFF1P04155 84 aa10.57□□□□□ -0.72
VPS52-220ENST00000493674 CD3DP04234 171 aa10.57□□□□□ -0.72
VPS52-220ENST00000493674 ZNF735P0CB33 412 aa10.57□□□□□ -0.72
VPS52-220ENST00000493674 AKAIN1P0CW23 69 aa10.57□□□□□ -0.72
VPS52-220ENST00000493674 SPNP16150 400 aa10.57□□□□□ -0.72
VPS52-220ENST00000493674 SLC6A1P30531 599 aa10.57□□□□□ -0.72
VPS52-220ENST00000493674 COL10A1Q03692 680 aa10.57□□□□□ -0.72
VPS52-220ENST00000493674 MICBQ29980 383 aa10.57□□□□□ -0.72
VPS52-220ENST00000493674 PLA1AQ53H76 456 aa10.57□□□□□ -0.72
VPS52-220ENST00000493674 RSBN1Q5VWQ0 802 aaPredicted RBP10.57□□□□□ -0.72
VPS52-220ENST00000493674 OR52W1Q6IF63 320 aa10.57□□□□□ -0.72
VPS52-220ENST00000493674 STEAP1BQ6NZ63 245 aa10.57□□□□□ -0.72
VPS52-220ENST00000493674 NRARPQ7Z6K4 114 aa10.57□□□□□ -0.72
VPS52-220ENST00000493674 CENPSQ8N2Z9 138 aa10.57□□□□□ -0.72
VPS52-220ENST00000493674 DUSP18Q8NEJ0 188 aa10.57□□□□□ -0.72
VPS52-220ENST00000493674 OR4S1Q8NGB4 309 aa10.57□□□□□ -0.72
VPS52-220ENST00000493674 COQ2Q96H96 371 aa10.57□□□□□ -0.72
VPS52-220ENST00000493674 COX4I2Q96KJ9 171 aa10.57□□□□□ -0.72
VPS52-220ENST00000493674 GAFA1Q96PS6 74 aa10.57□□□□□ -0.72
VPS52-220ENST00000493674 OCEL1Q9H607 264 aa10.57□□□□□ -0.72
VPS52-220ENST00000493674 IFT46Q9NQC8 304 aa10.57□□□□□ -0.72
VPS52-220ENST00000493674 DLL4Q9NR61 685 aa10.57□□□□□ -0.72
VPS52-220ENST00000493674 ETAA1Q9NY74 926 aa10.57□□□□□ -0.72
VPS52-220ENST00000493674 DNAJB11Q9UBS4 358 aa10.57□□□□□ -0.72
VPS52-220ENST00000493674 EDARQ9UNE0 448 aa10.57□□□□□ -0.72
VPS52-220ENST00000493674 MAB21L2Q9Y586 359 aa10.57□□□□□ -0.72
VPS52-220ENST00000493674 TEX15Q9BXT5 2789 aa10.57□□□□□ -0.72
VPS52-220ENST00000493674 SPG11Q96JI7 2443 aa10.56□□□□□ -0.72
VPS52-220ENST00000493674 ABCA2Q9BZC7 2435 aa10.56□□□□□ -0.72
VPS52-220ENST00000493674 PPIAL4EA0A075B759 164 aa10.56□□□□□ -0.72
VPS52-220ENST00000493674 TRAV38-1A0A0B4J264 116 aa10.56□□□□□ -0.72
VPS52-220ENST00000493674 LINC00854A0A1B0GVQ3 168 aa10.56□□□□□ -0.72
VPS52-220ENST00000493674 ZNF736B4DX44 427 aaPredicted RBP10.56□□□□□ -0.72
VPS52-220ENST00000493674 PPIAL4DF5H284 164 aa10.56□□□□□ -0.72
VPS52-220ENST00000493674 K7N7A8 449 aa10.56□□□□□ -0.72
VPS52-220ENST00000493674 PPIAL4FP0DN26 164 aa10.56□□□□□ -0.72
VPS52-220ENST00000493674 COL8A2P25067 703 aa10.56□□□□□ -0.72
VPS52-220ENST00000493674 HFEQ30201 348 aa10.56□□□□□ -0.72
VPS52-220ENST00000493674 ACTBL2Q562R1 376 aa10.56□□□□□ -0.72
VPS52-220ENST00000493674 VAX1Q5SQQ9 334 aa10.56□□□□□ -0.72
VPS52-220ENST00000493674 HIST2H2BCQ6DN03 193 aa10.56□□□□□ -0.72
VPS52-220ENST00000493674 SLC35E4Q6ICL7 350 aa10.56□□□□□ -0.72
VPS52-220ENST00000493674 MZT2BQ6NZ67 158 aa10.56□□□□□ -0.72
VPS52-220ENST00000493674 Q6ZNX1 250 aa10.56□□□□□ -0.72
VPS52-220ENST00000493674 BPIFB2Q8N4F0 458 aa10.56□□□□□ -0.72
VPS52-220ENST00000493674 ZNF561Q8N587 486 aa10.56□□□□□ -0.72
VPS52-220ENST00000493674 BOLLQ8N9W6 283 aaKnown RBP10.56□□□□□ -0.72
VPS52-220ENST00000493674 BEST4Q8NFU0 473 aa10.56□□□□□ -0.72
VPS52-220ENST00000493674 OR5T2Q8NGG2 359 aa10.56□□□□□ -0.72
VPS52-220ENST00000493674 OR4D10Q8NGI6 311 aa10.56□□□□□ -0.72
VPS52-220ENST00000493674 SNX22Q96L94 193 aa10.56□□□□□ -0.72
VPS52-220ENST00000493674 PPA2Q9H2U2 334 aa10.56□□□□□ -0.72
VPS52-220ENST00000493674 NCOR1P1Q9H4R4 102 aa10.56□□□□□ -0.72
VPS52-220ENST00000493674 Q9N2K0 584 aa10.56□□□□□ -0.72
VPS52-220ENST00000493674 MBNL3Q9NUK0 354 aaKnown RBP10.56□□□□□ -0.72
VPS52-220ENST00000493674 SLC2A8Q9NY64 477 aa10.56□□□□□ -0.72
VPS52-220ENST00000493674 ZNF230Q9UIE0 474 aaPredicted RBP10.56□□□□□ -0.72
VPS52-220ENST00000493674 PPIAL4AQ9Y536 164 aa10.56□□□□□ -0.72
VPS52-220ENST00000493674 H7C1Q1 480 aa10.55□□□□□ -0.72
VPS52-220ENST00000493674 HSPB6O14558 160 aa10.55□□□□□ -0.72
VPS52-220ENST00000493674 SIGLEC5O15389 551 aa10.55□□□□□ -0.72
VPS52-220ENST00000493674 RAB3DO95716 219 aa10.55□□□□□ -0.72
VPS52-220ENST00000493674 IGHV2-70P01814 119 aa10.55□□□□□ -0.72
VPS52-220ENST00000493674 MT-ND4P03905 459 aa10.55□□□□□ -0.72
VPS52-220ENST00000493674 FAUP35544 74 aaKnown RBP10.55□□□□□ -0.72
VPS52-220ENST00000493674 TAS2R46P59540 309 aa10.55□□□□□ -0.72
VPS52-220ENST00000493674 MEF2DQ14814 521 aa10.55□□□□□ -0.72
VPS52-220ENST00000493674 ZMYND11Q15326 602 aa10.55□□□□□ -0.72
VPS52-220ENST00000493674 SFRP4Q6FHJ7 346 aaPredicted RBP10.55□□□□□ -0.72
VPS52-220ENST00000493674 MOB1BQ7L9L4 216 aa10.55□□□□□ -0.72
VPS52-220ENST00000493674 NEK7Q8TDX7 302 aa10.55□□□□□ -0.72
VPS52-220ENST00000493674 CCL17Q92583 94 aa10.55□□□□□ -0.72
VPS52-220ENST00000493674 TINAGL1Q9GZM7 467 aaPredicted RBP10.55□□□□□ -0.72
VPS52-220ENST00000493674 FAM234AQ9H0X4 552 aa10.55□□□□□ -0.72
VPS52-220ENST00000493674 ZNF665Q9H7R5 613 aa10.55□□□□□ -0.72
VPS52-220ENST00000493674 ZNF701Q9NV72 531 aaPredicted RBP10.55□□□□□ -0.72
VPS52-220ENST00000493674 KAAG1Q9UBP8 84 aa10.55□□□□□ -0.72
VPS52-220ENST00000493674 ANXA10Q9UJ72 324 aa10.55□□□□□ -0.72
VPS52-220ENST00000493674 A0A1B0GW55 424 aa10.54□□□□□ -0.72
VPS52-220ENST00000493674 TMEM30CPA0ZSE6 113 aa10.54□□□□□ -0.72
VPS52-220ENST00000493674 CENPXA8MT69 81 aa10.54□□□□□ -0.72
VPS52-220ENST00000493674 LYNX1G3V0Z9 82 aa10.54□□□□□ -0.72
VPS52-220ENST00000493674 M0QYG6 137 aa10.54□□□□□ -0.72
VPS52-220ENST00000493674 MGST3O14880 152 aa10.54□□□□□ -0.72
VPS52-220ENST00000493674 FCN3O75636 299 aa10.54□□□□□ -0.72
VPS52-220ENST00000493674 ZNF205O95201 554 aa10.54□□□□□ -0.72
VPS52-220ENST00000493674 TK1P04183 234 aa10.54□□□□□ -0.72
VPS52-220ENST00000493674 FCER2P06734 321 aa10.54□□□□□ -0.72
VPS52-220ENST00000493674 DUX4L2P0CJ85 424 aa10.54□□□□□ -0.72
VPS52-220ENST00000493674 DUX4L3P0CJ86 424 aa10.54□□□□□ -0.72
VPS52-220ENST00000493674 DUX4L4P0CJ87 422 aa10.54□□□□□ -0.72
VPS52-220ENST00000493674 DUX4L5P0CJ88 424 aa10.54□□□□□ -0.72
VPS52-220ENST00000493674 DUX4L6P0CJ89 424 aa10.54□□□□□ -0.72
VPS52-220ENST00000493674 DUX4L7P0CJ90 424 aa10.54□□□□□ -0.72
VPS52-220ENST00000493674 LYNX1P0DP58 116 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms