RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 VAMP8Q9BV40 100 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 HSF4Q9ULV5 492 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 IGHV1-45A0A0A0MS14 117 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 TOX3O15405 576 aaPredicted RBP9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 EPHA1P21709 976 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 OR3A4PP47883 348 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 CCDC71LQ8N9Z2 235 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ZNF485Q8NCK3 441 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 IL22RA2Q969J5 263 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ADAT3Q96EY9 351 aaPredicted RBP9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 FER1L6-AS2Q96M78 137 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 NMES1Q9C002 83 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.41□□□□□ -0.91e-7■■■■□ 22.1
MSH5-SAPCD1-207ENST00000493662 RBFOX3A6NFN3 312 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 LYZL6O75951 148 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 COX6A1P12074 109 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 SLC25A1P53007 311 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 EGR3Q06889 387 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 PHLDA2Q53GA4 152 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 OR4A4PQ8NGN8 299 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 GPX8Q8TED1 209 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 LIPHQ8WWY8 451 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 APH1AQ96BI3 265 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 DMRTA2Q96SC8 542 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 CNTD2Q9H8S5 307 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 FKBP11Q9NYL4 201 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 RALYQ9UKM9 306 aaKnown RBP9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 VSIG4Q9Y279 399 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 CNOT4O95628 575 aaKnown RBP9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 CD8AP01732 235 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 GRPP07492 148 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 FOLR2P14207 255 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ADCYAP1P18509 176 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ADRA2CP18825 462 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 HLA-DRB3P79483 266 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 DCAF10Q5QP82 559 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 NCR3LG1Q68D85 454 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ADAD2Q8NCV1 583 aaKnown RBP9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 KCNG3Q8TAE7 436 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 RNF128Q8TEB7 428 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 RPUSD4Q96CM3 377 aaKnown RBP9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 SMIM7Q9BQ49 75 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 OR5AC2Q9NZP5 309 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 LIPGQ9Y5X9 500 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 MYO18BQ8IUG5 2567 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 CHRM2P08172 466 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 SNRPCP09234 159 aaKnown RBP9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 TRGC1P0CF51 173 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 TBPP20226 339 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 EFNB1P98172 346 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ZNF343Q6P1L6 599 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 C11orf42Q8N5U0 333 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 NKAIN3Q8N8D7 197 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 OR8B12Q8NGG6 310 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 NDUFAF3Q9BU61 184 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 HDGFL3Q9Y3E1 203 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 TRAV34A0A0B4J273 112 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 KLRC4-KLRK1H3BQV0 150 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 HS3ST1O14792 307 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 EFNA2O43921 213 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 C1QL1O75973 258 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 SFT2D2O95562 160 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 PGA4P0DJD7 388 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 PGA5P0DJD9 388 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 AGAP20933 346 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 OR3A1P47881 315 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 MEOX1P50221 254 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 GAS1P54826 345 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 SCAND1P57086 179 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 MALLQ13021 153 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 LGI3Q8N145 548 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 OR2V1Q8NHB1 315 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ASB5Q8WWX0 329 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 RDH5Q92781 318 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 EMG1Q92979 244 aaKnown RBP9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 TECTBQ96PL2 329 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 SIGLEC12Q96PQ1 595 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 FOXB1Q99853 325 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 HAO2Q9NYQ3 351 aa9.4□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 CLPSP04118 112 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 APLNRP35414 380 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 RANP62826 216 aaKnown RBP9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 SSPNQ14714 243 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 SLC43A2Q8N370 569 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ZSCAN4Q8NAM6 433 aaPredicted RBP9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 DYRK2Q92630 601 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 BTF3L4Q96K17 158 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 SLC17A5Q9NRA2 495 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 LIFP15018 202 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 CD200P41217 278 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 FABP6P51161 128 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 SOX8P57073 446 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 HIST1H3AP68431 136 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 TNFRSF9Q07011 255 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 CLEC18BQ6UXF7 455 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ADAMTS17Q8TE56 1095 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 FAM117AQ9C073 453 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 CDH20Q9HBT6 801 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 OBP2BQ9NPH6 170 aa9.39□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 SLC39A9Q9NUM3 307 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 179 ms