RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 FADS2O95864 444 aaKnown RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 MT-CO2P00403 227 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 PDYNP01213 254 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 IFNA5P01569 189 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 FABP3P05413 133 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 IGKV5-2P06315 115 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 ANXA4P09525 319 aaPredicted RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 H2AFZP0C0S5 128 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 OR10J4P0C629 311 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 TSPAN19P0C672 248 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 OR8U9P0C7N5 309 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 RBMY1DP0C7P1 496 aaKnown RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 SLC35E2BP0CK96 405 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 SLC35E2P0CK97 266 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 PNMTP11086 282 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 SCGB1A1P11684 91 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 GTF2F2P13984 249 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 FABP4P15090 132 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 CPN1P15169 458 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 UCHL3P15374 230 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 RPA2P15927 270 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 ABOP16442 354 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 CXCL2P19875 107 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 OMGP23515 440 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 FCARP24071 287 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 GADD45AP24522 165 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 GNRHRP30968 328 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 OTX2P32243 289 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 BRS3P32247 399 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 DRD3P35462 400 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 RPL29P47914 159 aaKnown RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 TFPI2P48307 235 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 TTPAP49638 278 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 CDKN2DP55273 166 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 ATP5IP56385 69 aaPredicted RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 TAS2R41P59536 307 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 UBE2KP61086 200 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 OSTNP61366 133 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 RAB11AP62491 216 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 RPS15P62841 145 aaKnown RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 IGLV3-21P80748 117 aaPredicted RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 FAM3AP98173 230 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 AKR1C1Q04828 323 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF763Q0D2J5 394 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 DPYSL3Q14195 570 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 MEF2DQ14814 521 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 SLC17A1Q14916 467 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 HERPUD1Q15011 391 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 TSNQ15631 228 aaKnown RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 RAB11BQ15907 218 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 PSG3Q16557 428 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 PCK2Q16822 640 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 CYP51A1Q16850 503 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 ARHGAP11BQ3KRB8 267 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 GLYR1Q49A26 553 aaPredicted RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 COX19Q49B96 90 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 IFI44LQ53G44 452 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 UNC50Q53HI1 259 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 KHDC3LQ587J8 217 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 PDZD11Q5EBL8 140 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 TFDP3Q5H9I0 405 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 LDLRAD2Q5SZI1 272 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 RTL6Q6ICC9 239 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 ASPHD2Q6ICH7 369 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 LAIR2Q6ISS4 152 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 H3F3CQ6NXT2 135 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 STEAP1BQ6NZ63 245 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 UQCC3Q6UW78 93 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 TMEM107Q6UX40 140 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 FAM131AQ6UXB0 335 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 TMPRSS11AQ6ZMR5 421 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF705AQ6ZN79 300 aaPredicted RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 Q6ZRG5 221 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 LRRC70Q7Z2Q7 622 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 ERASQ7Z444 233 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 GLT6D1Q7Z4J2 308 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 MRPL52Q86TS9 123 aaKnown RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 LINC01551Q86U37 167 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 SERPINA9Q86WD7 417 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 C17orf64Q86WR6 236 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 CALHM1Q8IU99 346 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 CBWD2Q8IUF1 395 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 ZDHHC21Q8IVQ6 265 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 KLHDC8AQ8IYD2 350 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 ZNF100Q8IYN0 542 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 GABRG1Q8N1C3 465 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 HIST3H2BBQ8N257 126 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 BPIFB2Q8N4F0 458 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 TMEM156Q8N614 296 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 EID2Q8N6I1 236 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 Q8N7P7 452 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 CCDC71LQ8N9Z2 235 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 ZSCAN4Q8NAM6 433 aaPredicted RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 SIDT2Q8NBJ9 832 aaKnown RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 RELL2Q8NC24 303 aaPredicted RBP1.62□□□□□ -2.15
HMGB1-208ENST00000490788 OR4S1Q8NGB4 309 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 OR11H7Q8NGC8 314 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 OR51L1Q8NGJ5 315 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 OR51S1Q8NGJ8 323 aa1.62□□□□□ -2.15
HMGB1-208ENST00000490788 OR1K1Q8NGR3 316 aa1.62□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms