RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 SPNS3Q6ZMD2 512 aa11.21□□□□□ -0.61
SHOX2-205ENST00000490689 OR10P1Q8NGE3 313 aa11.21□□□□□ -0.61
SHOX2-205ENST00000490689 PITPNC1Q9UKF7 332 aa11.21□□□□□ -0.61
SHOX2-205ENST00000490689 TRPM7Q96QT4 1865 aa11.21□□□□□ -0.61
SHOX2-205ENST00000490689 FCGR3AP08637 254 aa11.21□□□□□ -0.62
SHOX2-205ENST00000490689 OR8U8P0C7N1 319 aa11.21□□□□□ -0.62
SHOX2-205ENST00000490689 FAM157CP0CG43 387 aa11.21□□□□□ -0.62
SHOX2-205ENST00000490689 IGFBP3P17936 291 aaPredicted RBP11.21□□□□□ -0.62
SHOX2-205ENST00000490689 CD27P26842 260 aa11.21□□□□□ -0.62
SHOX2-205ENST00000490689 FUT6P51993 359 aa11.21□□□□□ -0.62
SHOX2-205ENST00000490689 SPATA46Q5T0L3 261 aa11.21□□□□□ -0.62
SHOX2-205ENST00000490689 COL13A1Q5TAT6 717 aaPredicted RBP11.21□□□□□ -0.62
SHOX2-205ENST00000490689 SPACA9Q96E40 222 aaPredicted RBP11.21□□□□□ -0.62
SHOX2-205ENST00000490689 ZNF385AQ96PM9 386 aaKnown RBP11.21□□□□□ -0.62
SHOX2-205ENST00000490689 ABI3Q9P2A4 366 aa11.21□□□□□ -0.62
SHOX2-205ENST00000490689 PLXNA3P51805 1871 aa11.21□□□□□ -0.62
SHOX2-205ENST00000490689 SHANK1Q9Y566 2161 aa11.2□□□□□ -0.62
SHOX2-205ENST00000490689 CRYM-AS1A6NIL9 109 aa11.2□□□□□ -0.62
SHOX2-205ENST00000490689 MGST1P10620 155 aaKnown RBP11.2□□□□□ -0.62
SHOX2-205ENST00000490689 SMAD4Q13485 552 aaKnown RBP11.2□□□□□ -0.62
SHOX2-205ENST00000490689 ZNF439Q8NDP4 499 aa11.2□□□□□ -0.62
SHOX2-205ENST00000490689 ACTR3CQ9C0K3 210 aaPredicted RBP11.2□□□□□ -0.62
SHOX2-205ENST00000490689 OBP2BQ9NPH6 170 aa11.2□□□□□ -0.62
SHOX2-205ENST00000490689 NCOR1O75376 2440 aa11.2□□□□□ -0.62
SHOX2-205ENST00000490689 BCAT2O15382 392 aaPredicted RBP11.2□□□□□ -0.62
SHOX2-205ENST00000490689 VDAC1P21796 283 aa11.2□□□□□ -0.62
SHOX2-205ENST00000490689 CCL20P78556 96 aa11.2□□□□□ -0.62
SHOX2-205ENST00000490689 OR6X1Q8NH79 312 aa11.2□□□□□ -0.62
SHOX2-205ENST00000490689 HLA-CQ95604 372 aa11.2□□□□□ -0.62
SHOX2-205ENST00000490689 A0A1W2PQD3 144 aa11.2□□□□□ -0.62
SHOX2-205ENST00000490689 M0R143 59 aa11.2□□□□□ -0.62
SHOX2-205ENST00000490689 MELTFP08582 738 aa11.2□□□□□ -0.62
SHOX2-205ENST00000490689 HLA-GP17693 338 aa11.2□□□□□ -0.62
SHOX2-205ENST00000490689 EN2P19622 333 aaPredicted RBP11.2□□□□□ -0.62
SHOX2-205ENST00000490689 HIST1H3AP68431 136 aa11.2□□□□□ -0.62
SHOX2-205ENST00000490689 C9orf50Q5SZB4 431 aa11.2□□□□□ -0.62
SHOX2-205ENST00000490689 OR2T10Q8NGZ9 312 aa11.2□□□□□ -0.62
SHOX2-205ENST00000490689 Q8WTZ3 238 aa11.2□□□□□ -0.62
SHOX2-205ENST00000490689 CHST5Q9GZS9 411 aa11.2□□□□□ -0.62
SHOX2-205ENST00000490689 CDH20Q9HBT6 801 aa11.2□□□□□ -0.62
SHOX2-205ENST00000490689 A0A1B0GTQ1 180 aa11.2□□□□□ -0.62
SHOX2-205ENST00000490689 C17orf112F2Z3M2 114 aa11.2□□□□□ -0.62
SHOX2-205ENST00000490689 ERVK-16P61578 105 aa11.2□□□□□ -0.62
SHOX2-205ENST00000490689 CATR1Q13166 79 aa11.2□□□□□ -0.62
SHOX2-205ENST00000490689 MRPL49Q13405 166 aaKnown RBP11.2□□□□□ -0.62
SHOX2-205ENST00000490689 GAB4Q2WGN9 574 aa11.2□□□□□ -0.62
SHOX2-205ENST00000490689 CDCA3Q99618 268 aaPredicted RBP11.2□□□□□ -0.62
SHOX2-205ENST00000490689 GABRG3Q99928 467 aa11.2□□□□□ -0.62
SHOX2-205ENST00000490689 SIRT7Q9NRC8 400 aa11.2□□□□□ -0.62
SHOX2-205ENST00000490689 GPR27Q9NS67 375 aa11.2□□□□□ -0.62
SHOX2-205ENST00000490689 MYOTQ9UBF9 498 aa11.2□□□□□ -0.62
SHOX2-205ENST00000490689 GNG12Q9UBI6 72 aa11.2□□□□□ -0.62
SHOX2-205ENST00000490689 STARD10Q9Y365 291 aa11.2□□□□□ -0.62
SHOX2-205ENST00000490689 HELZP42694 1942 aaKnown RBP11.19□□□□□ -0.62
SHOX2-205ENST00000490689 H0Y8G0 127 aa11.19□□□□□ -0.62
SHOX2-205ENST00000490689 TSPAN2O60636 221 aa11.19□□□□□ -0.62
SHOX2-205ENST00000490689 HOXC4P09017 264 aaPredicted RBP11.19□□□□□ -0.62
SHOX2-205ENST00000490689 CTXN2P0C2S0 81 aa11.19□□□□□ -0.62
SHOX2-205ENST00000490689 COX5AP20674 150 aa11.19□□□□□ -0.62
SHOX2-205ENST00000490689 GABRA2P47869 451 aa11.19□□□□□ -0.62
SHOX2-205ENST00000490689 SUMO3P55854 103 aaPredicted RBP11.19□□□□□ -0.62
SHOX2-205ENST00000490689 EDDM3BP56851 147 aa11.19□□□□□ -0.62
SHOX2-205ENST00000490689 SLC38A11Q08AI6 406 aa11.19□□□□□ -0.62
SHOX2-205ENST00000490689 EDDM3AQ14507 147 aa11.19□□□□□ -0.62
SHOX2-205ENST00000490689 ATP5SQ99766 215 aa11.19□□□□□ -0.62
SHOX2-205ENST00000490689 C12orf49Q9H741 205 aa11.19□□□□□ -0.62
SHOX2-205ENST00000490689 LILRA5A6NI73 299 aa11.19□□□□□ -0.62
SHOX2-205ENST00000490689 ZNF814B7Z6K7 855 aa11.19□□□□□ -0.62
SHOX2-205ENST00000490689 HOXA5P20719 270 aa11.19□□□□□ -0.62
SHOX2-205ENST00000490689 UBE2NP61088 152 aaKnown RBP11.19□□□□□ -0.62
SHOX2-205ENST00000490689 RAB31Q13636 194 aa11.19□□□□□ -0.62
SHOX2-205ENST00000490689 H2BFWTQ7Z2G1 175 aa11.19□□□□□ -0.62
SHOX2-205ENST00000490689 UHRF2Q96PU4 802 aa11.19□□□□□ -0.62
SHOX2-205ENST00000490689 DUSP15Q9H1R2 295 aaPredicted RBP11.19□□□□□ -0.62
SHOX2-205ENST00000490689 PAM16Q9Y3D7 125 aa11.19□□□□□ -0.62
SHOX2-205ENST00000490689 POLEQ07864 2286 aa11.19□□□□□ -0.62
SHOX2-205ENST00000490689 LMO7DNF2Z398 122 aa11.19□□□□□ -0.62
SHOX2-205ENST00000490689 CD5P06127 495 aa11.19□□□□□ -0.62
SHOX2-205ENST00000490689 SLC25A6P12236 298 aa11.19□□□□□ -0.62
SHOX2-205ENST00000490689 SUPT4H1P63272 117 aaKnown RBP11.19□□□□□ -0.62
SHOX2-205ENST00000490689 HLA-BQ31612 363 aa11.19□□□□□ -0.62
SHOX2-205ENST00000490689 FFAR4Q5NUL3 377 aa11.19□□□□□ -0.62
SHOX2-205ENST00000490689 ADIPOR1Q96A54 375 aa11.19□□□□□ -0.62
SHOX2-205ENST00000490689 FOXB1Q99853 325 aa11.19□□□□□ -0.62
SHOX2-205ENST00000490689 PCGF1Q9BSM1 259 aa11.19□□□□□ -0.62
SHOX2-205ENST00000490689 CBLN4Q9NTU7 201 aa11.19□□□□□ -0.62
SHOX2-205ENST00000490689 CNOT1A5YKK6 2376 aaKnown RBP11.18□□□□□ -0.62
SHOX2-205ENST00000490689 IGKV1D-8A0A087WSZ0 117 aa11.18□□□□□ -0.62
SHOX2-205ENST00000490689 CDS2O95674 445 aa11.18□□□□□ -0.62
SHOX2-205ENST00000490689 CRYAAP02489 173 aa11.18□□□□□ -0.62
SHOX2-205ENST00000490689 LBX1P52954 281 aa11.18□□□□□ -0.62
SHOX2-205ENST00000490689 PPP1CBP62140 327 aa11.18□□□□□ -0.62
SHOX2-205ENST00000490689 PNRC1Q12796 327 aaPredicted RBP11.18□□□□□ -0.62
SHOX2-205ENST00000490689 IL24Q13007 206 aa11.18□□□□□ -0.62
SHOX2-205ENST00000490689 TRIM61Q5EBN2 209 aa11.18□□□□□ -0.62
SHOX2-205ENST00000490689 MRGPRFQ96AM1 343 aa11.18□□□□□ -0.62
SHOX2-205ENST00000490689 MTCH2Q9Y6C9 303 aa11.18□□□□□ -0.62
SHOX2-205ENST00000490689 A0A0A6YYD4 124 aa11.18□□□□□ -0.62
SHOX2-205ENST00000490689 F6UZH7 168 aa11.18□□□□□ -0.62
SHOX2-205ENST00000490689 FOLR3P41439 243 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms