RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 DCDC5Q6ZRR9 648 aa14.15□□□□□ -0.14
VIM-205ENST00000485947 FAM90A1Q86YD7 464 aa14.15□□□□□ -0.14
VIM-205ENST00000485947 SNX29P2Q8IUI4 249 aa14.15□□□□□ -0.14
VIM-205ENST00000485947 Q8N402 240 aa14.15□□□□□ -0.14
VIM-205ENST00000485947 DTX3Q8N9I9 347 aa14.15□□□□□ -0.14
VIM-205ENST00000485947 SMIM4Q8WVI0 70 aa14.15□□□□□ -0.14
VIM-205ENST00000485947 RAB3CQ96E17 227 aa14.15□□□□□ -0.14
VIM-205ENST00000485947 NEIL1Q96FI4 390 aaPredicted RBP14.15□□□□□ -0.14
VIM-205ENST00000485947 SSBP3Q9BWW4 388 aaPredicted RBP14.15□□□□□ -0.14
VIM-205ENST00000485947 AUNIPQ9H7T9 357 aa14.15□□□□□ -0.14
VIM-205ENST00000485947 RNF7Q9UBF6 113 aa14.15□□□□□ -0.14
VIM-205ENST00000485947 OPN4Q9UHM6 478 aa14.15□□□□□ -0.14
VIM-205ENST00000485947 HSF4Q9ULV5 492 aa14.15□□□□□ -0.14
VIM-205ENST00000485947 INSIG2Q9Y5U4 225 aa14.15□□□□□ -0.14
VIM-205ENST00000485947 WNK2Q9Y3S1 2297 aa14.15□□□□□ -0.14
VIM-205ENST00000485947 hCG_1807616A0A1W2PRN6 198 aa14.14□□□□□ -0.15
VIM-205ENST00000485947 SRRM5B3KS81 715 aa14.14□□□□□ -0.15
VIM-205ENST00000485947 SOCS1O15524 211 aa14.14□□□□□ -0.15
VIM-205ENST00000485947 CA11O75493 328 aa14.14□□□□□ -0.15
VIM-205ENST00000485947 CYB5R3P00387 301 aaPredicted RBP14.14□□□□□ -0.15
VIM-205ENST00000485947 MELTFP08582 738 aa14.14□□□□□ -0.15
VIM-205ENST00000485947 RPS2P15880 293 aaKnown RBP14.14□□□□□ -0.15
VIM-205ENST00000485947 GABRR1P24046 479 aa14.14□□□□□ -0.15
VIM-205ENST00000485947 BLVRBP30043 206 aaPredicted RBP14.14□□□□□ -0.15
VIM-205ENST00000485947 NPY4RP50391 375 aa14.14□□□□□ -0.15
VIM-205ENST00000485947 TMEM50BP56557 158 aa14.14□□□□□ -0.15
VIM-205ENST00000485947 HILS1P60008 231 aa14.14□□□□□ -0.15
VIM-205ENST00000485947 MADCAM1Q13477 382 aa14.14□□□□□ -0.15
VIM-205ENST00000485947 TAF9Q16594 264 aa14.14□□□□□ -0.15
VIM-205ENST00000485947 PNLIPRP3Q17RR3 467 aa14.14□□□□□ -0.15
VIM-205ENST00000485947 PIGYQ3MUY2 71 aa14.14□□□□□ -0.15
VIM-205ENST00000485947 SPIN3Q5JUX0 258 aa14.14□□□□□ -0.15
VIM-205ENST00000485947 BTNL3Q6UXE8 466 aa14.14□□□□□ -0.15
VIM-205ENST00000485947 ZNF826PQ6ZT77 177 aa14.14□□□□□ -0.15
VIM-205ENST00000485947 Q6ZTK2 550 aa14.14□□□□□ -0.15
VIM-205ENST00000485947 CHST4Q8NCG5 386 aa14.14□□□□□ -0.15
VIM-205ENST00000485947 DEFB108BQ8NET1 73 aa14.14□□□□□ -0.15
VIM-205ENST00000485947 OR8B3Q8NGG8 313 aa14.14□□□□□ -0.15
VIM-205ENST00000485947 LRRC29Q8WV35 223 aa14.14□□□□□ -0.15
VIM-205ENST00000485947 ZNF488Q96MN9 340 aa14.14□□□□□ -0.15
VIM-205ENST00000485947 NEDD4LQ96PU5 975 aa14.14□□□□□ -0.15
VIM-205ENST00000485947 OR8B2Q96RD0 313 aa14.14□□□□□ -0.15
VIM-205ENST00000485947 TMEM246Q9BRR3 403 aa14.14□□□□□ -0.15
VIM-205ENST00000485947 SCPEP1Q9HB40 452 aa14.14□□□□□ -0.15
VIM-205ENST00000485947 SPACA1Q9HBV2 294 aa14.14□□□□□ -0.15
VIM-205ENST00000485947 AUP1Q9Y679 476 aa14.14□□□□□ -0.15
VIM-205ENST00000485947 IGHV3-64DA0A0J9YX35 117 aa14.13□□□□□ -0.15
VIM-205ENST00000485947 SERPINE3A8MV23 424 aa14.13□□□□□ -0.15
VIM-205ENST00000485947 F8VVB4 439 aa14.13□□□□□ -0.15
VIM-205ENST00000485947 F8VWA3 439 aa14.13□□□□□ -0.15
VIM-205ENST00000485947 MFNGO00587 321 aa14.13□□□□□ -0.15
VIM-205ENST00000485947 GEMIN2O14893 280 aaKnown RBP14.13□□□□□ -0.15
VIM-205ENST00000485947 PDCD6O75340 191 aa14.13□□□□□ -0.15
VIM-205ENST00000485947 IL7P13232 177 aa14.13□□□□□ -0.15
VIM-205ENST00000485947 GLRA1P23415 457 aa14.13□□□□□ -0.15
VIM-205ENST00000485947 PRSS3P35030 304 aa14.13□□□□□ -0.15
VIM-205ENST00000485947 PMELP40967 661 aa14.13□□□□□ -0.15
VIM-205ENST00000485947 PAX8Q06710 450 aa14.13□□□□□ -0.15
VIM-205ENST00000485947 ZNF146Q15072 292 aa14.13□□□□□ -0.15
VIM-205ENST00000485947 SMIM21Q3B7S5 101 aa14.13□□□□□ -0.15
VIM-205ENST00000485947 CDNFQ49AH0 187 aa14.13□□□□□ -0.15
VIM-205ENST00000485947 ACP7Q6ZNF0 438 aa14.13□□□□□ -0.15
VIM-205ENST00000485947 OR8H2Q8N162 312 aa14.13□□□□□ -0.15
VIM-205ENST00000485947 IFT22Q9H7X7 185 aa14.13□□□□□ -0.15
VIM-205ENST00000485947 SEBOXQ9HB31 216 aaPredicted RBP14.13□□□□□ -0.15
VIM-205ENST00000485947 GLS2Q9UI32 602 aa14.13□□□□□ -0.15
VIM-205ENST00000485947 TRAV38-1A0A0B4J264 116 aa14.12□□□□□ -0.15
VIM-205ENST00000485947 TRIM77I1YAP6 450 aa14.12□□□□□ -0.15
VIM-205ENST00000485947 LGALS8O00214 317 aa14.12□□□□□ -0.15
VIM-205ENST00000485947 WIPF1O43516 503 aa14.12□□□□□ -0.15
VIM-205ENST00000485947 KNG1P01042 644 aa14.12□□□□□ -0.15
VIM-205ENST00000485947 GLAP06280 429 aa14.12□□□□□ -0.15
VIM-205ENST00000485947 FUT3P21217 361 aa14.12□□□□□ -0.15
VIM-205ENST00000485947 CHATP28329 748 aa14.12□□□□□ -0.15
VIM-205ENST00000485947 GNB2P62879 340 aa14.12□□□□□ -0.15
VIM-205ENST00000485947 SSBP1Q04837 148 aaKnown RBP14.12□□□□□ -0.15
VIM-205ENST00000485947 TRIQKQ629K1 86 aa14.12□□□□□ -0.15
VIM-205ENST00000485947 BATF2Q8N1L9 274 aa14.12□□□□□ -0.15
VIM-205ENST00000485947 BPIFB2Q8N4F0 458 aa14.12□□□□□ -0.15
VIM-205ENST00000485947 GCSAMQ8N6F7 178 aa14.12□□□□□ -0.15
VIM-205ENST00000485947 FCAMRQ8WWV6 532 aa14.12□□□□□ -0.15
VIM-205ENST00000485947 ARHGAP5-AS1Q96IT6 56 aa14.12□□□□□ -0.15
VIM-205ENST00000485947 PECRQ9BY49 303 aa14.12□□□□□ -0.15
VIM-205ENST00000485947 MMP26Q9NRE1 261 aa14.12□□□□□ -0.15
VIM-205ENST00000485947 ABCB10Q9NRK6 738 aa14.12□□□□□ -0.15
VIM-205ENST00000485947 PLEKHJ1Q9NW61 149 aa14.12□□□□□ -0.15
VIM-205ENST00000485947 RCC2Q9P258 522 aaKnown RBP14.12□□□□□ -0.15
VIM-205ENST00000485947 SVEP1Q4LDE5 3571 aa14.11□□□□□ -0.15
VIM-205ENST00000485947 OR7C1O76099 320 aaPredicted RBP14.11□□□□□ -0.15
VIM-205ENST00000485947 LHBP01229 141 aa14.11□□□□□ -0.15
VIM-205ENST00000485947 DGCR2P98153 550 aa14.11□□□□□ -0.15
VIM-205ENST00000485947 PAX2Q02962 417 aa14.11□□□□□ -0.15
VIM-205ENST00000485947 SCN1BQ07699 218 aa14.11□□□□□ -0.15
VIM-205ENST00000485947 BAK1Q16611 211 aa14.11□□□□□ -0.15
VIM-205ENST00000485947 TUSC1Q2TAM9 212 aa14.11□□□□□ -0.15
VIM-205ENST00000485947 PLAC9Q5JTB6 97 aa14.11□□□□□ -0.15
VIM-205ENST00000485947 CD276Q5ZPR3 534 aa14.11□□□□□ -0.15
VIM-205ENST00000485947 SIGIRRQ6IA17 410 aa14.11□□□□□ -0.15
VIM-205ENST00000485947 GPX8Q8TED1 209 aa14.11□□□□□ -0.15
VIM-205ENST00000485947 FAM216AQ8WUB2 273 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms