RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 PGLYRP3Q96LB9 341 aa6.63□□□□□ -1.35
USP40-216ENST00000485943 ZNF649Q9BS31 505 aa6.63□□□□□ -1.35
USP40-216ENST00000485943 TMEM59Q9BXS4 323 aa6.63□□□□□ -1.35
USP40-216ENST00000485943 SELENOIQ9C0D9 397 aa6.63□□□□□ -1.35
USP40-216ENST00000485943 DUSP21Q9H596 190 aa6.63□□□□□ -1.35
USP40-216ENST00000485943 HES4Q9HCC6 221 aa6.63□□□□□ -1.35
USP40-216ENST00000485943 KCNIP1Q9NZI2 227 aa6.63□□□□□ -1.35
USP40-216ENST00000485943 GHRLQ9UBU3 117 aa6.63□□□□□ -1.35
USP40-216ENST00000485943 ZNF69Q9UC07 566 aa6.63□□□□□ -1.35
USP40-216ENST00000485943 TRAPPC2LQ9UL33 140 aa6.63□□□□□ -1.35
USP40-216ENST00000485943 LINC00312Q9Y6C7 94 aa6.63□□□□□ -1.35
USP40-216ENST00000485943 SIRT4Q9Y6E7 314 aaPredicted RBP6.63□□□□□ -1.35
USP40-216ENST00000485943 MTORP42345 2549 aa6.62□□□□□ -1.35
USP40-216ENST00000485943 ABCA2Q9BZC7 2435 aa6.62□□□□□ -1.35
USP40-216ENST00000485943 ZNF469Q96JG9 3925 aaPredicted RBP6.62□□□□□ -1.35
USP40-216ENST00000485943 hCG_2014768A0A024R1R8 64 aa6.62□□□□□ -1.35
USP40-216ENST00000485943 A0A087WXM4 84 aa6.62□□□□□ -1.35
USP40-216ENST00000485943 LOC100506127A0A0U1RQW1 187 aa6.62□□□□□ -1.35
USP40-216ENST00000485943 MEX3AA1L020 520 aaKnown RBP6.62□□□□□ -1.35
USP40-216ENST00000485943 AIPO00170 330 aa6.62□□□□□ -1.35
USP40-216ENST00000485943 NPFFO15130 113 aa6.62□□□□□ -1.35
USP40-216ENST00000485943 NOL3O60936 208 aaKnown RBP6.62□□□□□ -1.35
USP40-216ENST00000485943 PEX14O75381 377 aa6.62□□□□□ -1.35
USP40-216ENST00000485943 CLPXO76031 633 aa6.62□□□□□ -1.35
USP40-216ENST00000485943 IGHV4-38-2P0DP08 117 aa6.62□□□□□ -1.35
USP40-216ENST00000485943 ARSBP15848 533 aa6.62□□□□□ -1.35
USP40-216ENST00000485943 HTR2CP28335 458 aa6.62□□□□□ -1.35
USP40-216ENST00000485943 PRRX1P54821 245 aa6.62□□□□□ -1.35
USP40-216ENST00000485943 P2RX3P56373 397 aa6.62□□□□□ -1.35
USP40-216ENST00000485943 ERVK11-1P61568 191 aa6.62□□□□□ -1.35
USP40-216ENST00000485943 RPS25P62851 125 aaKnown RBP6.62□□□□□ -1.35
USP40-216ENST00000485943 AESQ08117 197 aa6.62□□□□□ -1.35
USP40-216ENST00000485943 LTC4SQ16873 150 aa6.62□□□□□ -1.35
USP40-216ENST00000485943 PIGYQ3MUY2 71 aa6.62□□□□□ -1.35
USP40-216ENST00000485943 RUSC1-AS1Q66K80 236 aa6.62□□□□□ -1.35
USP40-216ENST00000485943 ZNF773Q6PK81 442 aa6.62□□□□□ -1.35
USP40-216ENST00000485943 C12orf54Q6X4T0 127 aa6.62□□□□□ -1.35
USP40-216ENST00000485943 USP43Q70EL4 1123 aa6.62□□□□□ -1.35
USP40-216ENST00000485943 FGFRL1Q8N441 504 aa6.62□□□□□ -1.35
USP40-216ENST00000485943 PNKDQ8N490 385 aa6.62□□□□□ -1.35
USP40-216ENST00000485943 TPRX1Q8N7U7 411 aa6.62□□□□□ -1.35
USP40-216ENST00000485943 KCNG3Q8TAE7 436 aa6.62□□□□□ -1.35
USP40-216ENST00000485943 RGP1Q92546 391 aaPredicted RBP6.62□□□□□ -1.35
USP40-216ENST00000485943 MRPS24Q96EL2 167 aaKnown RBP6.62□□□□□ -1.35
USP40-216ENST00000485943 DUX5Q96PT3 197 aa6.62□□□□□ -1.35
USP40-216ENST00000485943 BANF2Q9H503 90 aa6.62□□□□□ -1.35
USP40-216ENST00000485943 C19orf12Q9NSK7 152 aa6.62□□□□□ -1.35
USP40-216ENST00000485943 ETAA1Q9NY74 926 aa6.62□□□□□ -1.35
USP40-216ENST00000485943 ZNF222Q9UK12 451 aa6.62□□□□□ -1.35
USP40-216ENST00000485943 UBE2J1Q9Y385 318 aaPredicted RBP6.62□□□□□ -1.35
USP40-216ENST00000485943 TRAV8-7A0A075B6U6 113 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 TRBV5-7A0A0A0MS05 114 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 CENPVL3A0A0U1RRI6 287 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 TMEM30CPA0ZSE6 113 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 F8VVB4 439 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 F8VWA3 439 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 SPINT2O43291 252 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 MGMTP16455 207 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 CCL3L1P16619 93 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 RAB3BP20337 219 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 PRTN3P24158 256 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 GADD45AP24522 165 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 CEACAM3P40198 252 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 UBE2E1P51965 193 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 RBM11P57052 281 aaKnown RBP6.61□□□□□ -1.35
USP40-216ENST00000485943 HILS1P60008 231 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 ZP1P60852 638 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 EMX1Q04741 257 aaPredicted RBP6.61□□□□□ -1.35
USP40-216ENST00000485943 KLRD1Q13241 179 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 TPBGQ13641 420 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 TAF9Q16594 264 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 KCTD21Q4G0X4 260 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 C6orf183Q5T699 404 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 TMEM200BQ69YZ2 307 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 LAIR2Q6ISS4 152 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 C1orf122Q6ZSJ8 110 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 PRIMA1Q86XR5 153 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 PHC2Q8IXK0 858 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 PRR18Q8N4B5 295 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 DTX3Q8N9I9 347 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 TSPAN14Q8NG11 270 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 OR4S1Q8NGB4 309 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 OR6M1Q8NGM8 313 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 C8orf46Q8TAG6 207 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 ZNF596Q8TC21 504 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 SSMEM1Q8WWF3 244 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 SGCDQ92629 289 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 CREB3L1Q96BA8 519 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 NKX3-1Q99801 234 aaPredicted RBP6.61□□□□□ -1.35
USP40-216ENST00000485943 DPCDQ9BVM2 203 aaPredicted RBP6.61□□□□□ -1.35
USP40-216ENST00000485943 SIRPDQ9H106 197 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 RAB18Q9NP72 206 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 PLEKHJ1Q9NW61 149 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 IL36GQ9NZH8 169 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 ABRACLQ9P1F3 81 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 IL36RNQ9UBH0 155 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 OPN4Q9UHM6 478 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 STUB1Q9UNE7 303 aa6.61□□□□□ -1.35
USP40-216ENST00000485943 AK6Q9Y3D8 172 aaKnown RBP6.61□□□□□ -1.35
USP40-216ENST00000485943 AMMECR1Q9Y4X0 333 aaPredicted RBP6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms