RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 BSXQ3C1V8 233 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 LAMTOR1Q6IAA8 161 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 CYHR1Q6ZMK1 362 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 TMEM25Q86YD3 366 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 C10orf107Q8IVU9 208 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 CPNE9Q8IYJ1 553 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 TCAIMQ8N3R3 496 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 RPRMLQ8N4K4 120 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 C3orf22Q8N5N4 141 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 IFT81Q8WYA0 676 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 IGF2BP2-AS1Q96M15 143 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 APOL4Q9BPW4 351 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 GABARAPL1Q9H0R8 117 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 ABCG5Q9H222 651 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 RHOFQ9HBH0 211 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 TAS2R13Q9NYV9 303 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 ZNF230Q9UIE0 474 aaPredicted RBP1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 ENPP5Q9UJA9 477 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 ZNF443Q9Y2A4 671 aaPredicted RBP1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 MYO15BQ96JP2 1530 aa1.34□□□□□ -2.2
CCDC88A-212ENST00000474059 SHANK1Q9Y566 2161 aa1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 GOLGA8QA0A0J9YX86 632 aa1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 FAM183AA6NL82 134 aa1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 GGTLC3B5MD39 225 aa1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 H3BMM0 161 aa1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 I3L4J1 428 aa1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 YKT6O15498 198 aa1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 SGCEO43556 437 aa1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 TCF21O43680 179 aa1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 PSIP1O75475 530 aaKnown RBP1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 S100A2P29034 98 aa1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 OR10A3P58181 314 aa1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 CASP8Q14790 479 aa1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 GOLGA7BQ2TAP0 167 aa1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 ELP2Q6IA86 826 aa1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 Q6ZQT7 251 aa1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 CLEC20AQ6ZU45 233 aa1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 FAM183BPQ6ZVS7 135 aa1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 LRRC6Q86X45 466 aa1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 EIF4E3Q8N5X7 224 aaKnown RBP1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 ZIC4Q8N9L1 334 aa1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 GATD1Q8NB37 220 aa1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 CMTM2Q8TAZ6 248 aa1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 CASTOR1Q8WTX7 329 aa1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 UBE2WQ96B02 151 aa1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 SERPINB11Q96P15 392 aa1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 PKMYT1Q99640 499 aa1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 TAPBPLQ9BX59 468 aa1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 METTL8Q9H825 291 aaKnown RBP1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 BTRCQ9Y297 605 aa1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 CARHSP1Q9Y2V2 147 aaKnown RBP1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 SNX24Q9Y343 169 aa1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 ARAP3Q8WWN8 1544 aa1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 POLR3AO14802 1390 aaPredicted RBP1.33□□□□□ -2.2
CCDC88A-212ENST00000474059 ITGB4P16144 1822 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 IGHV1-45A0A0A0MS14 117 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 A0A1W2PRG6 482 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 GOLGA8IPA6NC78 632 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 D6RAR5 112 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 RNASEK-C17orf49H0YIS7 233 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 CRXO43186 299 aaPredicted RBP1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 AQP9O43315 295 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 BRI3O95415 125 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 FADS2O95864 444 aaKnown RBP1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 PDYNP01213 254 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 SPNP16150 400 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 CTLA4P16410 223 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 ZNF708P17019 499 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 ZNF3P17036 446 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 LGALS3P17931 250 aaKnown RBP1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 PSMB9P28065 219 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 MAGEA6P43360 314 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 CBX5P45973 191 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 OR2B6P58173 313 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 RHOAP61586 193 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 DHRS2Q13268 280 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 LGALSLQ3ZCW2 172 aaPredicted RBP1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 LAIR2Q6ISS4 152 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 HCP5Q6MZN7 132 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 DGAT2L6Q6ZPD8 337 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 COPS6Q7L5N1 327 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 OLIG3Q7RTU3 272 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 MRPL52Q86TS9 123 aaKnown RBP1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 SLC25A45Q8N413 288 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 LY6G5BQ8NDX9 201 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 BPIFB6Q8NFQ5 453 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 MUC7Q8TAX7 377 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 FAM45AQ8TCE6 357 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 APOBEC3DQ96AK3 386 aaPredicted RBP1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 PYURFQ96I23 114 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 PGLYRP3Q96LB9 341 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 TRIB3Q96RU7 358 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 TSSK6Q9BXA6 273 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 OR2D2Q9H210 308 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 FBXL15Q9H469 300 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 POMPQ9Y244 141 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 TBL2Q9Y4P3 447 aaKnown RBP1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 U3KQK5 164 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 MUC6Q6W4X9 2439 aa1.32□□□□□ -2.2
CCDC88A-212ENST00000474059 ABCB11O95342 1321 aa1.32□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms