RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 SPATA2Q9UM82 520 aa12.2□□□□□ -0.46
COL9A3-209ENST00000469852 PEX16Q9Y5Y5 336 aa12.2□□□□□ -0.46
COL9A3-209ENST00000469852 TRAV20A0A0B4J274 112 aa12.19□□□□□ -0.46
COL9A3-209ENST00000469852 SMIM31A0A1B0GVY4 71 aa12.19□□□□□ -0.46
COL9A3-209ENST00000469852 UBE2QL1A1L167 161 aa12.19□□□□□ -0.46
COL9A3-209ENST00000469852 RAB27BO00194 218 aa12.19□□□□□ -0.46
COL9A3-209ENST00000469852 CSN2P05814 226 aa12.19□□□□□ -0.46
COL9A3-209ENST00000469852 ZNF182P17025 639 aaPredicted RBP12.19□□□□□ -0.46
COL9A3-209ENST00000469852 FUT3P21217 361 aa12.19□□□□□ -0.46
COL9A3-209ENST00000469852 DVL1P1P54792 670 aaPredicted RBP12.19□□□□□ -0.46
COL9A3-209ENST00000469852 P2RX3P56373 397 aa12.19□□□□□ -0.46
COL9A3-209ENST00000469852 ZNF273Q14593 569 aa12.19□□□□□ -0.46
COL9A3-209ENST00000469852 RSBN1Q5VWQ0 802 aaPredicted RBP12.19□□□□□ -0.46
COL9A3-209ENST00000469852 CD276Q5ZPR3 534 aa12.19□□□□□ -0.46
COL9A3-209ENST00000469852 OLFML2AQ68BL7 652 aa12.19□□□□□ -0.46
COL9A3-209ENST00000469852 Q71RC1 249 aaPredicted RBP12.19□□□□□ -0.46
COL9A3-209ENST00000469852 GDPD3Q7L5L3 318 aa12.19□□□□□ -0.46
COL9A3-209ENST00000469852 GLCCI1Q86VQ1 547 aa12.19□□□□□ -0.46
COL9A3-209ENST00000469852 FAM185AQ8N0U4 392 aa12.19□□□□□ -0.46
COL9A3-209ENST00000469852 OR5D13Q8NGL4 314 aa12.19□□□□□ -0.46
COL9A3-209ENST00000469852 C8orf46Q8TAG6 207 aa12.19□□□□□ -0.46
COL9A3-209ENST00000469852 ARHGAP5-AS1Q96IT6 56 aa12.19□□□□□ -0.46
COL9A3-209ENST00000469852 FAAP24Q9BTP7 215 aa12.19□□□□□ -0.46
COL9A3-209ENST00000469852 ATG5Q9H1Y0 275 aa12.19□□□□□ -0.46
COL9A3-209ENST00000469852 RHBDL2Q9NX52 303 aa12.19□□□□□ -0.46
COL9A3-209ENST00000469852 COMMD3Q9UBI1 195 aa12.19□□□□□ -0.46
COL9A3-209ENST00000469852 INSIG2Q9Y5U4 225 aa12.19□□□□□ -0.46
COL9A3-209ENST00000469852 ETV7Q9Y603 341 aa12.19□□□□□ -0.46
COL9A3-209ENST00000469852 TRAV39A0A0B4J263 110 aa12.18□□□□□ -0.46
COL9A3-209ENST00000469852 PPIAL4CA0A0B4J2A2 164 aa12.18□□□□□ -0.46
COL9A3-209ENST00000469852 KIR2DS1A0A191URI9 304 aa12.18□□□□□ -0.46
COL9A3-209ENST00000469852 ZNF701M0R085 212 aaPredicted RBP12.18□□□□□ -0.46
COL9A3-209ENST00000469852 GPR37O15354 613 aa12.18□□□□□ -0.46
COL9A3-209ENST00000469852 ECDO95905 644 aaPredicted RBP12.18□□□□□ -0.46
COL9A3-209ENST00000469852 AVPP01185 164 aa12.18□□□□□ -0.46
COL9A3-209ENST00000469852 PPIAL4GP0DN37 164 aa12.18□□□□□ -0.46
COL9A3-209ENST00000469852 CCL3L1P16619 93 aa12.18□□□□□ -0.46
COL9A3-209ENST00000469852 SCAND1P57086 179 aa12.18□□□□□ -0.46
COL9A3-209ENST00000469852 RPL31P62899 125 aaKnown RBP12.18□□□□□ -0.46
COL9A3-209ENST00000469852 KIAA2026Q5HYC2 2103 aa12.18□□□□□ -0.46
COL9A3-209ENST00000469852 KRBOX4Q5JUW0 171 aa12.18□□□□□ -0.46
COL9A3-209ENST00000469852 TMEM200BQ69YZ2 307 aa12.18□□□□□ -0.46
COL9A3-209ENST00000469852 CLEC9AQ6UXN8 241 aa12.18□□□□□ -0.46
COL9A3-209ENST00000469852 Q6ZPA2 131 aa12.18□□□□□ -0.46
COL9A3-209ENST00000469852 SAMD12Q8N8I0 201 aa12.18□□□□□ -0.46
COL9A3-209ENST00000469852 DTX3Q8N9I9 347 aa12.18□□□□□ -0.46
COL9A3-209ENST00000469852 OR56B1Q8NGI3 324 aa12.18□□□□□ -0.46
COL9A3-209ENST00000469852 OR10R2Q8NGX6 335 aa12.18□□□□□ -0.46
COL9A3-209ENST00000469852 PPP1R35Q8TAP8 253 aa12.18□□□□□ -0.46
COL9A3-209ENST00000469852 NEK7Q8TDX7 302 aa12.18□□□□□ -0.46
COL9A3-209ENST00000469852 KCTD12Q96CX2 325 aaKnown RBP12.18□□□□□ -0.46
COL9A3-209ENST00000469852 DCUN1D5Q9BTE7 237 aa12.18□□□□□ -0.46
COL9A3-209ENST00000469852 MRI1Q9BV20 369 aa12.18□□□□□ -0.46
COL9A3-209ENST00000469852 PECRQ9BY49 303 aa12.18□□□□□ -0.46
COL9A3-209ENST00000469852 TMPRSS13Q9BYE2 586 aa12.18□□□□□ -0.46
COL9A3-209ENST00000469852 CCDC59Q9P031 241 aaKnown RBP12.18□□□□□ -0.46
COL9A3-209ENST00000469852 KIF25Q9UIL4 384 aa12.18□□□□□ -0.46
COL9A3-209ENST00000469852 ELF5Q9UKW6 265 aaPredicted RBP12.18□□□□□ -0.46
COL9A3-209ENST00000469852 KCNK7Q9Y2U2 307 aa12.18□□□□□ -0.46
COL9A3-209ENST00000469852 SONP18583 2426 aaKnown RBP12.17□□□□□ -0.46
COL9A3-209ENST00000469852 TRBV23-1A0A0A0MS06 115 aa12.17□□□□□ -0.46
COL9A3-209ENST00000469852 A0A1W2PQ09 198 aa12.17□□□□□ -0.46
COL9A3-209ENST00000469852 A6NHS1 94 aa12.17□□□□□ -0.46
COL9A3-209ENST00000469852 MCRIP1C9JLW8 97 aa12.17□□□□□ -0.46
COL9A3-209ENST00000469852 ENSAO43768 121 aaKnown RBP12.17□□□□□ -0.46
COL9A3-209ENST00000469852 TMEM127O75204 238 aa12.17□□□□□ -0.46
COL9A3-209ENST00000469852 EIF4EP06730 217 aaKnown RBP12.17□□□□□ -0.46
COL9A3-209ENST00000469852 ERP29P30040 261 aaKnown RBP12.17□□□□□ -0.46
COL9A3-209ENST00000469852 RANBP1P43487 201 aa12.17□□□□□ -0.46
COL9A3-209ENST00000469852 DLX1P56177 255 aa12.17□□□□□ -0.46
COL9A3-209ENST00000469852 ERVFRD-1P60508 538 aa12.17□□□□□ -0.46
COL9A3-209ENST00000469852 DCAF12L2Q5VW00 463 aa12.17□□□□□ -0.46
COL9A3-209ENST00000469852 FAHD2BQ6P2I3 314 aaPredicted RBP12.17□□□□□ -0.46
COL9A3-209ENST00000469852 ZNF497Q6ZNH5 498 aa12.17□□□□□ -0.46
COL9A3-209ENST00000469852 C1orf229Q6ZS94 237 aaPredicted RBP12.17□□□□□ -0.46
COL9A3-209ENST00000469852 CMTM4Q8IZR5 234 aa12.17□□□□□ -0.46
COL9A3-209ENST00000469852 FAHD2AQ96GK7 314 aa12.17□□□□□ -0.46
COL9A3-209ENST00000469852 NEDD4LQ96PU5 975 aa12.17□□□□□ -0.46
COL9A3-209ENST00000469852 HDHD3Q9BSH5 251 aaPredicted RBP12.17□□□□□ -0.46
COL9A3-209ENST00000469852 SLIRPQ9GZT3 109 aaKnown RBP12.17□□□□□ -0.46
COL9A3-209ENST00000469852 ZMAT3Q9HA38 289 aaKnown RBP12.17□□□□□ -0.46
COL9A3-209ENST00000469852 SPACA1Q9HBV2 294 aa12.17□□□□□ -0.46
COL9A3-209ENST00000469852 YAE1D1Q9NRH1 226 aa12.17□□□□□ -0.46
COL9A3-209ENST00000469852 ETAA1Q9NY74 926 aa12.17□□□□□ -0.46
COL9A3-209ENST00000469852 OPN4Q9UHM6 478 aa12.17□□□□□ -0.46
COL9A3-209ENST00000469852 A0A075B6Q4 140 aa12.16□□□□□ -0.46
COL9A3-209ENST00000469852 ODAMA1E959 279 aa12.16□□□□□ -0.46
COL9A3-209ENST00000469852 HPGDSO60760 199 aa12.16□□□□□ -0.46
COL9A3-209ENST00000469852 GNB3P16520 340 aa12.16□□□□□ -0.46
COL9A3-209ENST00000469852 DLX6P56179 175 aa12.16□□□□□ -0.46
COL9A3-209ENST00000469852 ARF6P62330 175 aa12.16□□□□□ -0.46
COL9A3-209ENST00000469852 PAX5Q02548 391 aa12.16□□□□□ -0.46
COL9A3-209ENST00000469852 PRB3Q04118 309 aaPredicted RBP12.16□□□□□ -0.46
COL9A3-209ENST00000469852 PAX8Q06710 450 aa12.16□□□□□ -0.46
COL9A3-209ENST00000469852 C11orf91Q3C1V1 193 aa12.16□□□□□ -0.46
COL9A3-209ENST00000469852 UBE2NLQ5JXB2 153 aa12.16□□□□□ -0.46
COL9A3-209ENST00000469852 Q6ZTK2 550 aa12.16□□□□□ -0.46
COL9A3-209ENST00000469852 C5orf24Q7Z6I8 188 aa12.16□□□□□ -0.46
COL9A3-209ENST00000469852 C11orf42Q8N5U0 333 aa12.16□□□□□ -0.46
COL9A3-209ENST00000469852 Q8N7P7 452 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms