RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 LYRM2Q9NU23 88 aaPredicted RBP3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 TMEM38BQ9NVV0 291 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 TAS2R16Q9NYV7 291 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 EHFQ9NZC4 300 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 MRPL27Q9P0M9 148 aaKnown RBP3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 MMP17Q9ULZ9 603 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 PKIGQ9Y2B9 76 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 ZFP30Q9Y2G7 519 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 ZNF256Q9Y2P7 627 aaPredicted RBP3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 NOS1P29475 1434 aa3.84□□□□□ -1.79
CCDC88A-210ENST00000468534 TTC37Q6PGP7 1564 aa3.84□□□□□ -1.8
CCDC88A-210ENST00000468534 ZNF724A8MTY0 619 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 EEF1E1-BLOC1S5C9J1V9 151 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 C11orf98E9PRG8 122 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 F6UB75 175 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 NPIPB9F8W1W9 429 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 M0R143 59 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 SULT2B1O00204 365 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 ZNHIT1O43257 154 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 EEF1E1O43324 174 aaKnown RBP3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 IGKV1D-16P01601 117 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 APOA2P02652 100 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 IGKV5-2P06315 115 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 DBIP07108 87 aaKnown RBP3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 OR5H8P0DN80 308 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 ZNF30P17039 623 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 CXCL3P19876 107 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 BCL3P20749 454 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 CA6P23280 308 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 KDELR1P24390 212 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 MIPP30301 263 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 APLNRP35414 380 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 CTRLP40313 264 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 GNG5P63218 68 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 PMAIP1Q13794 54 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 SHHQ15465 462 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 TMEM30BQ3MIR4 351 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 ZNF684Q5T5D7 378 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 REP15Q6BDI9 236 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 RNF165Q6ZSG1 346 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 NFE4Q86UQ8 179 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 KRTAP7-1Q8IUC3 87 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 ACBD7Q8N6N7 88 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 OR4E2Q8NGC2 313 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 OR51G1Q8NGK1 321 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 TERB2Q8NHR7 220 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 MFSD8Q8NHS3 518 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 ZNF564Q8TBZ8 553 aaPredicted RBP3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 OR51E1Q8TCB6 317 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 ZNF675Q8TD23 568 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 ZFP90Q8TF47 636 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 SSC4DQ8WTU2 575 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 CYGBQ8WWM9 190 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 GMPPAQ96IJ6 420 aaPredicted RBP3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 RNF157Q96PX1 679 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 OR4K3Q96R72 315 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 DOHHQ9BU89 302 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 EMC6Q9BV81 110 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 TM2D1Q9BX74 207 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 SUCNR1Q9BXA5 334 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 LINC00470Q9BZP3 86 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 RNASE7Q9H1E1 156 aaKnown RBP3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 C14orf105Q9NVL8 296 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 DNAJC27Q9NZQ0 273 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 ERG28Q9UKR5 140 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 BAIAP2Q9UQB8 552 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 ZNF257Q9Y2Q1 563 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 HDGFL3Q9Y3E1 203 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 OR2W1Q9Y3N9 320 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 KIAA1107Q9UPP5 1409 aa3.83□□□□□ -1.8
CCDC88A-210ENST00000468534 TRAV36DV7A0A075B6V5 113 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 A0A0J9YY10 115 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 A0A1B0GX78 115 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 COPEO14579 308 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 GNG7O60262 68 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 CDK2AP2O75956 126 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 KBTBD11O94819 623 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 CDRT1O95170 752 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 SLC2A10O95528 541 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 MOSP00540 346 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 PSMB9P28065 219 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 KIR2DS2P43631 304 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 ZNF239Q16600 458 aaKnown RBP3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 OLFML2AQ68BL7 652 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 KRTAP5-4Q6L8H1 288 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 TEX261Q6UWH6 196 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 GFRALQ6UXV0 394 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 GDPGP1Q6ZNW5 385 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 GOLT1AQ6ZVE7 132 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 NAA40Q86UY6 237 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 OOSP2Q86WS3 158 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 TMEM219Q86XT9 240 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 C8orf59Q8N0T1 100 aaPredicted RBP3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 LYG1Q8N1E2 194 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 OR11H6Q8NGC7 330 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 OR52E2Q8NGJ4 325 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 OR10R2Q8NGX6 335 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 OR10D3Q8NH80 312 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 ORAOV1Q8WV07 137 aa3.82□□□□□ -1.8
CCDC88A-210ENST00000468534 FGF11Q92914 225 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms