RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 ATP12AP54707 1039 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 CDKN2DP55273 166 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 CAV3P56539 151 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 RPL37AP61513 92 aaKnown RBP3.37□□□□□ -1.87
HMGB1-207ENST00000468384 PHEXP78562 749 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 LIPEQ05469 1076 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 GAGE5Q13069 117 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 GAGE6Q13070 117 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 DGUOKQ16854 277 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 C12orf74Q32Q52 190 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 LRRC37A5PQ49AS3 106 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 AGKQ53H12 422 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 TTC32Q5I0X7 151 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 CEP85LQ5SZL2 805 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 LIPKQ5VXJ0 399 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 OR2T2Q6IF00 324 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 PAGE2Q7Z2X7 111 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 NANOGNBQ7Z5D8 188 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 ADAD2Q8NCV1 583 aaKnown RBP3.37□□□□□ -1.87
HMGB1-207ENST00000468384 OR13C3Q8NGS6 347 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 OR6N1Q8NGY5 312 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.37□□□□□ -1.87
HMGB1-207ENST00000468384 RASD2Q96D21 266 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 SLC41A3Q96GZ6 507 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 OXGR1Q96P68 337 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 ALG12Q9BV10 488 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 EMC6Q9BV81 110 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 FUNDC2Q9BWH2 189 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 TAPBPLQ9BX59 468 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 MRPL13Q9BYD1 178 aaKnown RBP3.37□□□□□ -1.87
HMGB1-207ENST00000468384 DPH3P1Q9H4G8 78 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 MED20Q9H944 212 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 WDR76Q9H967 626 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 C19orf12Q9NSK7 152 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 C1orf123Q9NWV4 160 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 TAS2R13Q9NYV9 303 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 USE1Q9NZ43 259 aa3.37□□□□□ -1.87
HMGB1-207ENST00000468384 SAA2-SAA4A0A096LPE2 208 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 CLDN24A6NM45 220 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 ANKRD30BLA7E2S9 258 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 A8MVM7 634 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 NPIPB9F8W1W9 429 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 WRBO00258 174 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 SIGLEC5O15389 551 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 STK16O75716 305 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 TXNDC12O95881 172 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 UBTFL6P0CB48 400 aaPredicted RBP3.36□□□□□ -1.87
HMGB1-207ENST00000468384 PGA4P0DJD7 388 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 PGA3P0DJD8 388 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 RRASP10301 218 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 CCL3L1P16619 93 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 ACKR3P25106 362 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 POLR2HP52434 150 aaKnown RBP3.36□□□□□ -1.87
HMGB1-207ENST00000468384 ARHGDIBP52566 201 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 KLF5Q13887 457 aaPredicted RBP3.36□□□□□ -1.87
HMGB1-207ENST00000468384 PCK2Q16822 640 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 TPD52L1Q16890 204 aaPredicted RBP3.36□□□□□ -1.87
HMGB1-207ENST00000468384 LIPJQ5W064 366 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 ZNF826PQ6ZT77 177 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 CLDN22Q8N7P3 220 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 COX18Q8N8Q8 333 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 CDRT4Q8N9R6 151 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 SLC37A3Q8NCC5 494 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 DCAKDQ8WVC6 231 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 PHYHIPQ92561 330 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 LINC01600Q96MT4 127 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 S1PR3Q99500 378 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 MAGT1Q9H0U3 335 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 HAUS4Q9H6D7 363 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 TMEM100Q9NV29 134 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 MRPL39Q9NYK5 338 aaKnown RBP3.36□□□□□ -1.87
HMGB1-207ENST00000468384 ZNF225Q9UK10 706 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 ZNF221Q9UK13 617 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 STK38LQ9Y2H1 464 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 STARD10Q9Y365 291 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 OARD1Q9Y530 152 aa3.36□□□□□ -1.87
HMGB1-207ENST00000468384 TRBV4-1A0A0J9YWV2 114 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 CHEK1O14757 476 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 DFFBO76075 338 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 TSHBP01222 138 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 GSTA2P09210 222 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 OR5H8P0DN80 308 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 PNMTP11086 282 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 RPL35AP18077 110 aaKnown RBP3.35□□□□□ -1.87
HMGB1-207ENST00000468384 PGAM1P18669 254 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 IMPDH1P20839 514 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 CHI3L1P36222 383 aaPredicted RBP3.35□□□□□ -1.87
HMGB1-207ENST00000468384 HOXA1P49639 335 aaPredicted RBP3.35□□□□□ -1.87
HMGB1-207ENST00000468384 NCBP2P52298 156 aaKnown RBP eCLIP3.35□□□□□ -1.87
HMGB1-207ENST00000468384 LINC00315P59091 139 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 KRTAP10-8P60410 259 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 ESRRGP62508 458 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 GUCY2DQ02846 1103 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 SMARCD3Q6STE5 483 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 SCXQ7RTU7 201 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 ISCA2Q86U28 154 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 KIRREL3Q8IZU9 778 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 Q8NAQ8 132 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 CCDC197Q8NCU1 140 aa3.35□□□□□ -1.87
HMGB1-207ENST00000468384 OR6M1Q8NGM8 313 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms