RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 TOR1AO14656 332 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 IGKV1-13P0DP09 117 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 KCNJ3P48549 501 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 CAV2P51636 162 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 CLN3Q13286 438 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 SPATA46Q5T0L3 261 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 C10orf91Q5T1B1 145 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 C20orf204Q6ZNR8 217 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 ZNF818PQ6ZRF7 136 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 TMPRSS7Q7RTY8 843 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 DPPA2Q7Z7J5 298 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 TBC1D26Q86UD7 250 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 C17orf78Q8N4C9 275 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 ZFP62Q8NB50 900 aaPredicted RBP7.65□□□□□ -1.18
SYNE1-217ENST00000466159 OR5P3Q8WZ94 311 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 POM121Q96HA1 1249 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 USB1Q9BQ65 265 aaKnown RBP7.65□□□□□ -1.18
SYNE1-217ENST00000466159 FAM86C1Q9NVL1 165 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 SPRR3Q9UBC9 169 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 IGKV1-6A0A0C4DH72 117 aa7.65□□□□□ -1.19
SYNE1-217ENST00000466159 NKX2-6A6NCS4 301 aa7.65□□□□□ -1.19
SYNE1-217ENST00000466159 HS3ST1O14792 307 aa7.65□□□□□ -1.19
SYNE1-217ENST00000466159 ST8SIA3O43173 380 aa7.65□□□□□ -1.19
SYNE1-217ENST00000466159 TK1P04183 234 aa7.65□□□□□ -1.19
SYNE1-217ENST00000466159 GLAP06280 429 aa7.65□□□□□ -1.19
SYNE1-217ENST00000466159 CD46P15529 392 aa7.65□□□□□ -1.19
SYNE1-217ENST00000466159 APLNRP35414 380 aa7.65□□□□□ -1.19
SYNE1-217ENST00000466159 NHLH2Q02577 135 aa7.65□□□□□ -1.19
SYNE1-217ENST00000466159 OR2T2Q6IF00 324 aa7.65□□□□□ -1.19
SYNE1-217ENST00000466159 BTNL8Q6UX41 500 aa7.65□□□□□ -1.19
SYNE1-217ENST00000466159 Q6ZRG5 221 aa7.65□□□□□ -1.19
SYNE1-217ENST00000466159 Q6ZS49 121 aa7.65□□□□□ -1.19
SYNE1-217ENST00000466159 GAPTQ8N292 157 aa7.65□□□□□ -1.19
SYNE1-217ENST00000466159 UBAC2Q8NBM4 344 aa7.65□□□□□ -1.19
SYNE1-217ENST00000466159 DMBX1Q8NFW5 382 aa7.65□□□□□ -1.19
SYNE1-217ENST00000466159 OR1K1Q8NGR3 316 aa7.65□□□□□ -1.19
SYNE1-217ENST00000466159 RDH5Q92781 318 aa7.65□□□□□ -1.19
SYNE1-217ENST00000466159 WDYHV1Q96HA8 205 aa7.65□□□□□ -1.19
SYNE1-217ENST00000466159 RCL1Q9Y2P8 373 aaKnown RBP7.65□□□□□ -1.19
SYNE1-217ENST00000466159 TMED3Q9Y3Q3 217 aa7.65□□□□□ -1.19
SYNE1-217ENST00000466159 CFAP47Q6ZTR5 3102 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 SPENQ96T58 3664 aaKnown RBP7.64□□□□□ -1.19
SYNE1-217ENST00000466159 SLC22A20A6NK97 555 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 ANKRD30BLA7E2S9 258 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 NDUFA2O43678 99 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 CA6P23280 308 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 ASCL1P50553 236 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 MPV17LQ2QL34 196 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 MDP1Q86V88 176 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 SUMF2Q8NBJ7 301 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 SUMF1Q8NBK3 374 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 CLRN3Q8NCR9 226 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 OR4D5Q8NGN0 318 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 BCL2L2Q92843 193 aaPredicted RBP7.64□□□□□ -1.19
SYNE1-217ENST00000466159 IP6K3Q96PC2 410 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 NRIP2Q9BQI9 281 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 TMEM222Q9H0R3 208 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 LHX6Q9UPM6 363 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 CARHSP1Q9Y2V2 147 aaKnown RBP7.64□□□□□ -1.19
SYNE1-217ENST00000466159 UBE2J1Q9Y385 318 aaPredicted RBP7.64□□□□□ -1.19
SYNE1-217ENST00000466159 ZFHX4Q86UP3 3567 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 TRGV5A0A0B4J1U4 118 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 A0A1W2PR80 420 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 TRDCB7Z8K6 153 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 C9JQL5 133 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 RNASEK-C17orf49H0YIS7 233 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 HSD17B6O14756 317 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 GPR137BO60478 399 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 RHBDL1O75783 438 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 OR8U9P0C7N5 309 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 ARG2P78540 354 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 PMP22Q01453 160 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 IL13RA2Q14627 380 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 FBXW9Q5XUX1 488 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 MYPOPQ86VE0 399 aaPredicted RBP7.64□□□□□ -1.19
SYNE1-217ENST00000466159 CBLN2Q8IUK8 224 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 ZNF565Q8N9K5 539 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 OR8U1Q8NH10 309 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 SEC11CQ9BY50 192 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 PARP11Q9NR21 331 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 CCL28Q9NRJ3 127 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 PURGQ9UJV8 347 aaKnown RBP7.64□□□□□ -1.19
SYNE1-217ENST00000466159 ATP23Q9Y6H3 246 aa7.64□□□□□ -1.19
SYNE1-217ENST00000466159 TRAV24A0A0B4J272 114 aa7.63□□□□□ -1.19
SYNE1-217ENST00000466159 CELA3BP08861 270 aa7.63□□□□□ -1.19
SYNE1-217ENST00000466159 CD80P33681 288 aa7.63□□□□□ -1.19
SYNE1-217ENST00000466159 P2RY1P47900 373 aa7.63□□□□□ -1.19
SYNE1-217ENST00000466159 NPBWR1P48145 328 aa7.63□□□□□ -1.19
SYNE1-217ENST00000466159 GNG3P63215 75 aa7.63□□□□□ -1.19
SYNE1-217ENST00000466159 SRSF7Q16629 238 aaKnown RBP eCLIP7.63□□□□□ -1.19
SYNE1-217ENST00000466159 ZNF766Q5HY98 468 aa7.63□□□□□ -1.19
SYNE1-217ENST00000466159 GPR157Q5UAW9 335 aa7.63□□□□□ -1.19
SYNE1-217ENST00000466159 ZNF695Q8IW36 515 aa7.63□□□□□ -1.19
SYNE1-217ENST00000466159 OR10Z1Q8NGY1 313 aa7.63□□□□□ -1.19
SYNE1-217ENST00000466159 MRPL30Q8TCC3 161 aaKnown RBP7.63□□□□□ -1.19
SYNE1-217ENST00000466159 SH3BGRL3Q9H299 93 aa7.63□□□□□ -1.19
SYNE1-217ENST00000466159 ARV1Q9H2C2 271 aa7.63□□□□□ -1.19
SYNE1-217ENST00000466159 POMT1Q9Y6A1 747 aa7.63□□□□□ -1.19
SYNE1-217ENST00000466159 PRSS44E7EML9 344 aa7.63□□□□□ -1.19
SYNE1-217ENST00000466159 TNFSF12O43508 249 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms