RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 ACSF3Q4G176 576 aaPredicted RBP17.06■□□□□ 0.32
SDF4-205ENST00000465727 NMSQ5H8A3 153 aa17.06■□□□□ 0.32
SDF4-205ENST00000465727 CXorf66Q5JRM2 361 aaPredicted RBP17.06■□□□□ 0.32
SDF4-205ENST00000465727 COA6Q5JTJ3 125 aaKnown RBP17.06■□□□□ 0.32
SDF4-205ENST00000465727 TCEAL6Q6IPX3 200 aa17.06■□□□□ 0.32
SDF4-205ENST00000465727 P4HA3Q7Z4N8 544 aa17.06■□□□□ 0.32
SDF4-205ENST00000465727 TMEM54Q969K7 222 aa17.06■□□□□ 0.32
SDF4-205ENST00000465727 METTL7AQ9H8H3 244 aa17.06■□□□□ 0.32
SDF4-205ENST00000465727 GNG13Q9P2W3 67 aa17.06■□□□□ 0.32
SDF4-205ENST00000465727 RNF150Q9ULK6 438 aa17.06■□□□□ 0.32
SDF4-205ENST00000465727 SHANK1Q9Y566 2161 aa17.06■□□□□ 0.32
SDF4-205ENST00000465727 IGKV1-27A0A075B6S5 117 aa17.05■□□□□ 0.32
SDF4-205ENST00000465727 ADAM20O43506 726 aa17.05■□□□□ 0.32
SDF4-205ENST00000465727 GNRHRP30968 328 aa17.05■□□□□ 0.32
SDF4-205ENST00000465727 PTGDSP41222 190 aa17.05■□□□□ 0.32
SDF4-205ENST00000465727 C4orf17Q53FE4 359 aa17.05■□□□□ 0.32
SDF4-205ENST00000465727 TBC1D26Q86UD7 250 aa17.05■□□□□ 0.32
SDF4-205ENST00000465727 DYRK2Q92630 601 aa17.05■□□□□ 0.32
SDF4-205ENST00000465727 SIGLEC12Q96PQ1 595 aa17.05■□□□□ 0.32
SDF4-205ENST00000465727 NEU1Q99519 415 aa17.05■□□□□ 0.32
SDF4-205ENST00000465727 CERS4Q9HA82 394 aa17.05■□□□□ 0.32
SDF4-205ENST00000465727 CRLF2Q9HC73 371 aa17.05■□□□□ 0.32
SDF4-205ENST00000465727 PLEK2Q9NYT0 353 aa17.05■□□□□ 0.32
SDF4-205ENST00000465727 GCGP01275 180 aa17.05■□□□□ 0.32
SDF4-205ENST00000465727 TCN2P20062 427 aa17.05■□□□□ 0.32
SDF4-205ENST00000465727 SNAI3Q3KNW1 292 aa17.05■□□□□ 0.32
SDF4-205ENST00000465727 PIGYQ3MUY2 71 aa17.05■□□□□ 0.32
SDF4-205ENST00000465727 Q6ZS49 121 aa17.05■□□□□ 0.32
SDF4-205ENST00000465727 TMEM217Q8N7C4 229 aa17.05■□□□□ 0.32
SDF4-205ENST00000465727 OR2M3Q8NG83 312 aa17.05■□□□□ 0.32
SDF4-205ENST00000465727 IL22RA2Q969J5 263 aa17.05■□□□□ 0.32
SDF4-205ENST00000465727 MAGT1Q9H0U3 335 aa17.05■□□□□ 0.32
SDF4-205ENST00000465727 PIGBOS1A0A0B4J2F0 54 aa17.04■□□□□ 0.32
SDF4-205ENST00000465727 FAM221AA4D161 298 aa17.04■□□□□ 0.32
SDF4-205ENST00000465727 IFNA5P01569 189 aa17.04■□□□□ 0.32
SDF4-205ENST00000465727 ANKRD37Q7Z713 158 aa17.04■□□□□ 0.32
SDF4-205ENST00000465727 C20orf196Q8IYI0 205 aa17.04■□□□□ 0.32
SDF4-205ENST00000465727 OR2V1Q8NHB1 315 aa17.04■□□□□ 0.32
SDF4-205ENST00000465727 ST3GAL6Q9Y274 331 aa17.04■□□□□ 0.32
SDF4-205ENST00000465727 SHISA7A6NL88 538 aa17.03■□□□□ 0.32
SDF4-205ENST00000465727 TMEM50AO95807 157 aa17.03■□□□□ 0.32
SDF4-205ENST00000465727 NPBWR2P48146 333 aa17.03■□□□□ 0.32
SDF4-205ENST00000465727 ZFP36L1Q07352 338 aaKnown RBP17.03■□□□□ 0.32
SDF4-205ENST00000465727 SHISA6Q6ZSJ9 500 aa17.03■□□□□ 0.32
SDF4-205ENST00000465727 OR1P1Q8NH06 330 aa17.03■□□□□ 0.32
SDF4-205ENST00000465727 MBD3L1Q8WWY6 194 aa17.03■□□□□ 0.32
SDF4-205ENST00000465727 TRBV11-1A0A0K0K1C0 115 aa17.03■□□□□ 0.32
SDF4-205ENST00000465727 DHHO43323 396 aa17.03■□□□□ 0.32
SDF4-205ENST00000465727 AMBPP02760 352 aa17.03■□□□□ 0.32
SDF4-205ENST00000465727 UCP1P25874 307 aa17.03■□□□□ 0.32
SDF4-205ENST00000465727 ZNF154Q13106 437 aa17.03■□□□□ 0.32
SDF4-205ENST00000465727 SRSF7Q16629 238 aaKnown RBP eCLIP17.03■□□□□ 0.322e-11■■■■■ 40.5
SDF4-205ENST00000465727 TMEM42Q69YG0 159 aa17.03■□□□□ 0.32
SDF4-205ENST00000465727 ABLIM2Q6H8Q1 611 aa17.03■□□□□ 0.32
SDF4-205ENST00000465727 TGIF2LYQ8IUE0 185 aa17.03■□□□□ 0.32
SDF4-205ENST00000465727 PLXDC1Q8IUK5 500 aa17.03■□□□□ 0.32
SDF4-205ENST00000465727 TDHQ8IZJ6 230 aa17.03■□□□□ 0.32
SDF4-205ENST00000465727 OR4X1Q8NH49 305 aa17.03■□□□□ 0.32
SDF4-205ENST00000465727 LRFN1Q9P244 771 aa17.03■□□□□ 0.32
SDF4-205ENST00000465727 ZNF391Q9UJN7 358 aa17.03■□□□□ 0.32
SDF4-205ENST00000465727 CHST1O43916 411 aa17.02■□□□□ 0.32
SDF4-205ENST00000465727 BTF3P20290 206 aaKnown RBP17.02■□□□□ 0.32
SDF4-205ENST00000465727 CRYGSP22914 178 aa17.02■□□□□ 0.32
SDF4-205ENST00000465727 USF2Q15853 346 aaPredicted RBP17.02■□□□□ 0.32
SDF4-205ENST00000465727 ZNF787Q6DD87 383 aa17.02■□□□□ 0.32
SDF4-205ENST00000465727 SLC25A26Q70HW3 274 aa17.02■□□□□ 0.32
SDF4-205ENST00000465727 TMEM123Q8N131 208 aa17.02■□□□□ 0.32
SDF4-205ENST00000465727 PYGO2Q9BRQ0 406 aa17.02■□□□□ 0.32
SDF4-205ENST00000465727 RNF115Q9Y4L5 304 aa17.02■□□□□ 0.32
SDF4-205ENST00000465727 IGKV1-12A0A0C4DH73 117 aa17.01■□□□□ 0.31
SDF4-205ENST00000465727 TCAPO15273 167 aa17.01■□□□□ 0.31
SDF4-205ENST00000465727 OR2J2O76002 312 aa17.01■□□□□ 0.31
SDF4-205ENST00000465727 IGKV1D-12P01611 117 aa17.01■□□□□ 0.31
SDF4-205ENST00000465727 BRICD5Q6PL45 260 aa17.01■□□□□ 0.31
SDF4-205ENST00000465727 THNSL2Q86YJ6 484 aa17.01■□□□□ 0.31
SDF4-205ENST00000465727 ZNF664Q8N3J9 261 aa17.01■□□□□ 0.31
SDF4-205ENST00000465727 PLPPR1Q8TBJ4 325 aa17.01■□□□□ 0.31
SDF4-205ENST00000465727 CA5BP1Q8WTZ4 195 aa17.01■□□□□ 0.31
SDF4-205ENST00000465727 ACY3Q96HD9 319 aa17.01■□□□□ 0.31
SDF4-205ENST00000465727 SLC7A10Q9NS82 523 aa17.01■□□□□ 0.31
SDF4-205ENST00000465727 P4HTMQ9NXG6 502 aa17.01■□□□□ 0.31
SDF4-205ENST00000465727 VAX2Q9UIW0 290 aa17.01■□□□□ 0.31
SDF4-205ENST00000465727 IGLV3-12A0A075B6K2 115 aa17.01■□□□□ 0.31
SDF4-205ENST00000465727 ZFP92A6NM28 416 aa17.01■□□□□ 0.31
SDF4-205ENST00000465727 ATXN7O15265 892 aaPredicted RBP17.01■□□□□ 0.31
SDF4-205ENST00000465727 LINC01565O15544 149 aa17.01■□□□□ 0.31
SDF4-205ENST00000465727 PIAS2O75928 621 aa17.01■□□□□ 0.31
SDF4-205ENST00000465727 IFNA1P01562 189 aa17.01■□□□□ 0.31
SDF4-205ENST00000465727 RBM11P57052 281 aaKnown RBP17.01■□□□□ 0.31
SDF4-205ENST00000465727 NUTF2P61970 127 aaKnown RBP17.01■□□□□ 0.31
SDF4-205ENST00000465727 RAB35Q15286 201 aa17.01■□□□□ 0.31
SDF4-205ENST00000465727 SPIN3Q5JUX0 258 aa17.01■□□□□ 0.31
SDF4-205ENST00000465727 PHYHD1Q5SRE7 291 aa17.01■□□□□ 0.31
SDF4-205ENST00000465727 SLC25A24Q6NUK1 477 aa17.01■□□□□ 0.31
SDF4-205ENST00000465727 Q6ZPA2 131 aa17.01■□□□□ 0.31
SDF4-205ENST00000465727 PSMG3Q9BT73 122 aaPredicted RBP17.01■□□□□ 0.31
SDF4-205ENST00000465727 ZNF442Q9H7R0 627 aa17.01■□□□□ 0.31
SDF4-205ENST00000465727 SEMA5BQ9P283 1151 aa17.01■□□□□ 0.31
SDF4-205ENST00000465727 VAMP5O95183 116 aa17■□□□□ 0.31
SDF4-205ENST00000465727 NRASP01111 189 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms