RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 RAB11BQ15907 218 aa14.53□□□□□ -0.08
COL7A1-205ENST00000465238 PAN3Q58A45 887 aaKnown RBP14.53□□□□□ -0.08
COL7A1-205ENST00000465238 TMEM200BQ69YZ2 307 aa14.53□□□□□ -0.08
COL7A1-205ENST00000465238 KIR3DL3Q8N743 410 aa14.53□□□□□ -0.08
COL7A1-205ENST00000465238 SELENOIQ9C0D9 397 aa14.53□□□□□ -0.08
COL7A1-205ENST00000465238 PPA2Q9H2U2 334 aa14.53□□□□□ -0.08
COL7A1-205ENST00000465238 BANF2Q9H503 90 aa14.53□□□□□ -0.08
COL7A1-205ENST00000465238 DSCAML1Q8TD84 2053 aa14.53□□□□□ -0.08
COL7A1-205ENST00000465238 GEMIN2O14893 280 aaKnown RBP14.52□□□□□ -0.09
COL7A1-205ENST00000465238 BPNT1O95861 308 aa14.52□□□□□ -0.09
COL7A1-205ENST00000465238 RAB3BP20337 219 aa14.52□□□□□ -0.09
COL7A1-205ENST00000465238 MEF2CQ06413 473 aaPredicted RBP14.52□□□□□ -0.09
COL7A1-205ENST00000465238 TAF9Q16594 264 aa14.52□□□□□ -0.09
COL7A1-205ENST00000465238 MPV17LQ2QL34 196 aa14.52□□□□□ -0.09
COL7A1-205ENST00000465238 TIMM50Q3ZCQ8 353 aa14.52□□□□□ -0.09
COL7A1-205ENST00000465238 KCNG3Q8TAE7 436 aa14.52□□□□□ -0.09
COL7A1-205ENST00000465238 FAM46BQ96A09 425 aa14.52□□□□□ -0.09
COL7A1-205ENST00000465238 KCTD7Q96MP8 289 aa14.52□□□□□ -0.09
COL7A1-205ENST00000465238 SIRPDQ9H106 197 aa14.52□□□□□ -0.09
COL7A1-205ENST00000465238 MMP24Q9Y5R2 645 aa14.52□□□□□ -0.09
COL7A1-205ENST00000465238 TRAV24A0A0B4J272 114 aa14.51□□□□□ -0.09
COL7A1-205ENST00000465238 A0A1B0GUS0 222 aa14.51□□□□□ -0.09
COL7A1-205ENST00000465238 hADV38S2A0JD32 116 aa14.51□□□□□ -0.09
COL7A1-205ENST00000465238 SHISA3A0PJX4 238 aa14.51□□□□□ -0.09
COL7A1-205ENST00000465238 M0R1W7 72 aa14.51□□□□□ -0.09
COL7A1-205ENST00000465238 MPIG6BO95866 241 aa14.51□□□□□ -0.09
COL7A1-205ENST00000465238 MMP9P14780 707 aa14.51□□□□□ -0.09
COL7A1-205ENST00000465238 ARSBP15848 533 aa14.51□□□□□ -0.09
COL7A1-205ENST00000465238 MDKP21741 143 aaPredicted RBP14.51□□□□□ -0.09
COL7A1-205ENST00000465238 ERP29P30040 261 aaKnown RBP14.51□□□□□ -0.09
COL7A1-205ENST00000465238 P2RY14Q15391 338 aa14.51□□□□□ -0.09
COL7A1-205ENST00000465238 ATAD3CQ5T2N8 411 aa14.51□□□□□ -0.09
COL7A1-205ENST00000465238 GDPGP1Q6ZNW5 385 aa14.51□□□□□ -0.09
COL7A1-205ENST00000465238 C1orf122Q6ZSJ8 110 aa14.51□□□□□ -0.09
COL7A1-205ENST00000465238 TPRA1Q86W33 373 aa14.51□□□□□ -0.09
COL7A1-205ENST00000465238 TMEM104Q8NE00 496 aa14.51□□□□□ -0.09
COL7A1-205ENST00000465238 YIPF6Q96EC8 236 aa14.51□□□□□ -0.09
COL7A1-205ENST00000465238 TBX15Q96SF7 602 aa14.51□□□□□ -0.09
COL7A1-205ENST00000465238 MRPS26Q9BYN8 205 aaKnown RBP14.51□□□□□ -0.09
COL7A1-205ENST00000465238 IFT22Q9H7X7 185 aa14.51□□□□□ -0.09
COL7A1-205ENST00000465238 KIAA2026Q5HYC2 2103 aa14.5□□□□□ -0.09
COL7A1-205ENST00000465238 hCG_1809904A0A1W2PP81 198 aa14.5□□□□□ -0.09
COL7A1-205ENST00000465238 A0A1W2PPE2 198 aa14.5□□□□□ -0.09
COL7A1-205ENST00000465238 A0A1W2PR64 198 aa14.5□□□□□ -0.09
COL7A1-205ENST00000465238 A0A1W2PRV1 198 aa14.5□□□□□ -0.09
COL7A1-205ENST00000465238 H3BUI4 141 aa14.5□□□□□ -0.09
COL7A1-205ENST00000465238 HSPB6O14558 160 aa14.5□□□□□ -0.09
COL7A1-205ENST00000465238 CSN2P05814 226 aa14.5□□□□□ -0.09
COL7A1-205ENST00000465238 SMIM18P0DKX4 95 aa14.5□□□□□ -0.09
COL7A1-205ENST00000465238 VSIG8P0DPA2 414 aa14.5□□□□□ -0.09
COL7A1-205ENST00000465238 P2RX3P56373 397 aa14.5□□□□□ -0.09
COL7A1-205ENST00000465238 AESQ08117 197 aa14.5□□□□□ -0.09
COL7A1-205ENST00000465238 ATXN7L3Q14CW9 347 aaPredicted RBP14.5□□□□□ -0.09
COL7A1-205ENST00000465238 KRBOX4Q5JUW0 171 aa14.5□□□□□ -0.09
COL7A1-205ENST00000465238 HES5Q5TA89 166 aa14.5□□□□□ -0.09
COL7A1-205ENST00000465238 OR10K2Q6IF99 312 aa14.5□□□□□ -0.09
COL7A1-205ENST00000465238 TREML4Q6UXN2 200 aa14.5□□□□□ -0.09
COL7A1-205ENST00000465238 Q6YL49 198 aa14.5□□□□□ -0.09
COL7A1-205ENST00000465238 VMO1Q7Z5L0 202 aa14.5□□□□□ -0.09
COL7A1-205ENST00000465238 TMEM86BQ8N661 226 aa14.5□□□□□ -0.09
COL7A1-205ENST00000465238 TPRX1Q8N7U7 411 aa14.5□□□□□ -0.09
COL7A1-205ENST00000465238 SUMF2Q8NBJ7 301 aa14.5□□□□□ -0.09
COL7A1-205ENST00000465238 TAF15Q92804 592 aaKnown RBP eCLIP14.5□□□□□ -0.09
COL7A1-205ENST00000465238 DPCDQ9BVM2 203 aaPredicted RBP14.5□□□□□ -0.09
COL7A1-205ENST00000465238 BARHL1Q9BZE3 327 aa14.5□□□□□ -0.09
COL7A1-205ENST00000465238 SPACA1Q9HBV2 294 aa14.5□□□□□ -0.09
COL7A1-205ENST00000465238 ING3Q9NXR8 418 aa14.5□□□□□ -0.09
COL7A1-205ENST00000465238 STEAP1Q9UHE8 339 aa14.5□□□□□ -0.09
COL7A1-205ENST00000465238 FAM90A10PA6NDY2 464 aa14.49□□□□□ -0.09
COL7A1-205ENST00000465238 FAM90A18PA6NE21 464 aa14.49□□□□□ -0.09
COL7A1-205ENST00000465238 FAM181BA6NEQ2 426 aa14.49□□□□□ -0.09
COL7A1-205ENST00000465238 FAM90A16PA6NEW6 464 aa14.49□□□□□ -0.09
COL7A1-205ENST00000465238 FAM90A20PA6NIJ5 464 aa14.49□□□□□ -0.09
COL7A1-205ENST00000465238 FAM90A8PA6NJQ4 464 aa14.49□□□□□ -0.09
COL7A1-205ENST00000465238 FAM90A7PA6NKC0 464 aa14.49□□□□□ -0.09
COL7A1-205ENST00000465238 FAM90A22PA8MWA6 464 aa14.49□□□□□ -0.09
COL7A1-205ENST00000465238 FAM90A12PA8MX19 464 aa14.49□□□□□ -0.09
COL7A1-205ENST00000465238 FAM90A5PA8MXJ8 464 aa14.49□□□□□ -0.09
COL7A1-205ENST00000465238 FAM90A23PA8MXZ1 464 aa14.49□□□□□ -0.09
COL7A1-205ENST00000465238 AIREO43918 545 aa14.49□□□□□ -0.09
COL7A1-205ENST00000465238 CRYBA1P05813 215 aa14.49□□□□□ -0.09
COL7A1-205ENST00000465238 FAM90A15PP0C7V4 464 aa14.49□□□□□ -0.09
COL7A1-205ENST00000465238 FAM90A13PP0C7W8 464 aa14.49□□□□□ -0.09
COL7A1-205ENST00000465238 FAM90A14PP0C7W9 464 aa14.49□□□□□ -0.09
COL7A1-205ENST00000465238 FAM90A24PP0C7X0 464 aa14.49□□□□□ -0.09
COL7A1-205ENST00000465238 OMGP23515 440 aa14.49□□□□□ -0.09
COL7A1-205ENST00000465238 KCNJ3P48549 501 aa14.49□□□□□ -0.09
COL7A1-205ENST00000465238 OR10A3P58181 314 aa14.49□□□□□ -0.09
COL7A1-205ENST00000465238 ZNF273Q14593 569 aa14.49□□□□□ -0.09
COL7A1-205ENST00000465238 RUSC1-AS1Q66K80 236 aa14.49□□□□□ -0.09
COL7A1-205ENST00000465238 OR2W3Q7Z3T1 314 aa14.49□□□□□ -0.09
COL7A1-205ENST00000465238 TRAPPC6BQ86SZ2 158 aa14.49□□□□□ -0.09
COL7A1-205ENST00000465238 OR51D1Q8NGF3 324 aa14.49□□□□□ -0.09
COL7A1-205ENST00000465238 OR4F5Q8NH21 305 aa14.49□□□□□ -0.09
COL7A1-205ENST00000465238 NEK7Q8TDX7 302 aa14.49□□□□□ -0.09
COL7A1-205ENST00000465238 LHX4Q969G2 390 aa14.49□□□□□ -0.09
COL7A1-205ENST00000465238 FAM3DQ96BQ1 224 aa14.49□□□□□ -0.09
COL7A1-205ENST00000465238 Q96M66 194 aa14.49□□□□□ -0.09
COL7A1-205ENST00000465238 CENPOQ9BU64 300 aa14.49□□□□□ -0.09
COL7A1-205ENST00000465238 TMEM59Q9BXS4 323 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms