RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 C1QL4Q86Z23 238 aa11.21□□□□□ -0.61
USP4-206ENST00000461553 OR51T1Q8NGJ9 327 aa11.21□□□□□ -0.61
USP4-206ENST00000461553 SMIM19Q96E16 107 aa11.21□□□□□ -0.61
USP4-206ENST00000461553 C8orf4Q9NR00 106 aa11.21□□□□□ -0.61
USP4-206ENST00000461553 DIMT1Q9UNQ2 313 aaKnown RBP11.21□□□□□ -0.61
USP4-206ENST00000461553 EXOSC1Q9Y3B2 195 aaKnown RBP11.21□□□□□ -0.61
USP4-206ENST00000461553 MEIKINA0A087WXM9 373 aa11.2□□□□□ -0.62
USP4-206ENST00000461553 CLIC3O95833 236 aa11.2□□□□□ -0.62
USP4-206ENST00000461553 IGLV1-47P01700 117 aa11.2□□□□□ -0.62
USP4-206ENST00000461553 NFYBP25208 207 aa11.2□□□□□ -0.62
USP4-206ENST00000461553 GDNFP39905 211 aa11.2□□□□□ -0.62
USP4-206ENST00000461553 OR3A4PP47883 348 aa11.2□□□□□ -0.62
USP4-206ENST00000461553 KCNJ3P48549 501 aa11.2□□□□□ -0.62
USP4-206ENST00000461553 ETV1P50549 477 aa11.2□□□□□ -0.62
USP4-206ENST00000461553 RBM39Q14498 530 aaKnown RBP11.2□□□□□ -0.62
USP4-206ENST00000461553 LRRC36Q1X8D7 754 aa11.2□□□□□ -0.62
USP4-206ENST00000461553 NSUN5P1Q3KNT7 163 aa11.2□□□□□ -0.62
USP4-206ENST00000461553 DDI2Q5TDH0 399 aa11.2□□□□□ -0.62
USP4-206ENST00000461553 TTC23Q5W5X9 447 aa11.2□□□□□ -0.62
USP4-206ENST00000461553 HIST2H2BDQ6DRA6 164 aa11.2□□□□□ -0.62
USP4-206ENST00000461553 CCDC144NLQ6NUI1 221 aa11.2□□□□□ -0.62
USP4-206ENST00000461553 OR10K1Q8NGX5 313 aa11.2□□□□□ -0.62
USP4-206ENST00000461553 OR5M11Q96RB7 305 aa11.2□□□□□ -0.62
USP4-206ENST00000461553 S100A13Q99584 98 aa11.2□□□□□ -0.62
USP4-206ENST00000461553 TMEM138Q9NPI0 162 aa11.2□□□□□ -0.62
USP4-206ENST00000461553 CHCHD3Q9NX63 227 aaKnown RBP11.2□□□□□ -0.62
USP4-206ENST00000461553 AMMECR1Q9Y4X0 333 aaPredicted RBP11.2□□□□□ -0.62
USP4-206ENST00000461553 A0A087X0M5 115 aa11.19□□□□□ -0.62
USP4-206ENST00000461553 TRAV24A0A0B4J272 114 aa11.19□□□□□ -0.62
USP4-206ENST00000461553 KBTBD11-OT1A0A1B0GTJ5 212 aa11.19□□□□□ -0.62
USP4-206ENST00000461553 A0A1B0GX30 115 aa11.19□□□□□ -0.62
USP4-206ENST00000461553 FAM90A22PA8MWA6 464 aa11.19□□□□□ -0.62
USP4-206ENST00000461553 HTR3BO95264 441 aa11.19□□□□□ -0.62
USP4-206ENST00000461553 OPN1MWP04001 364 aa11.19□□□□□ -0.62
USP4-206ENST00000461553 CSTBP04080 98 aaKnown RBP11.19□□□□□ -0.62
USP4-206ENST00000461553 OPN1MW2P0DN77 364 aa11.19□□□□□ -0.62
USP4-206ENST00000461553 OPN1MW3P0DN78 364 aa11.19□□□□□ -0.62
USP4-206ENST00000461553 ZNF93P35789 620 aaPredicted RBP11.19□□□□□ -0.62
USP4-206ENST00000461553 MNDAP41218 407 aa11.19□□□□□ -0.62
USP4-206ENST00000461553 PRRX1P54821 245 aa11.19□□□□□ -0.62
USP4-206ENST00000461553 C17orf58Q2M2W7 97 aa11.19□□□□□ -0.62
USP4-206ENST00000461553 TMEM95Q3KNT9 176 aa11.19□□□□□ -0.62
USP4-206ENST00000461553 PIGYQ3MUY2 71 aa11.19□□□□□ -0.62
USP4-206ENST00000461553 TPTE2P1Q5T6R2 138 aa11.19□□□□□ -0.62
USP4-206ENST00000461553 NDUFA11Q86Y39 141 aa11.19□□□□□ -0.62
USP4-206ENST00000461553 PACRGLQ8N7B6 248 aa11.19□□□□□ -0.62
USP4-206ENST00000461553 ZNF565Q8N9K5 539 aa11.19□□□□□ -0.62
USP4-206ENST00000461553 OR9G1Q8NH87 305 aa11.19□□□□□ -0.62
USP4-206ENST00000461553 KIRREL1Q96J84 757 aa11.19□□□□□ -0.62
USP4-206ENST00000461553 SLC25A33Q9BSK2 321 aa11.19□□□□□ -0.62
USP4-206ENST00000461553 BARHL1Q9BZE3 327 aa11.19□□□□□ -0.62
USP4-206ENST00000461553 METTL9Q9H1A3 318 aa11.19□□□□□ -0.62
USP4-206ENST00000461553 LIN7BQ9HAP6 207 aa11.19□□□□□ -0.62
USP4-206ENST00000461553 CALYQ9NYX4 217 aa11.19□□□□□ -0.62
USP4-206ENST00000461553 CKLFQ9UBR5 152 aa11.19□□□□□ -0.62
USP4-206ENST00000461553 KIF25Q9UIL4 384 aa11.19□□□□□ -0.62
USP4-206ENST00000461553 ZNF281Q9Y2X9 895 aa11.19□□□□□ -0.62
USP4-206ENST00000461553 DNAH3Q8TD57 4116 aa11.18□□□□□ -0.62
USP4-206ENST00000461553 OOSP1A8MZH6 123 aa11.18□□□□□ -0.62
USP4-206ENST00000461553 BUB1B-PAK6H3BSN5 160 aa11.18□□□□□ -0.62
USP4-206ENST00000461553 OR7C1O76099 320 aaPredicted RBP11.18□□□□□ -0.62
USP4-206ENST00000461553 OR2F2O95006 317 aa11.18□□□□□ -0.62
USP4-206ENST00000461553 CDRT1O95170 752 aa11.18□□□□□ -0.62
USP4-206ENST00000461553 IL1AP01583 271 aa11.18□□□□□ -0.62
USP4-206ENST00000461553 CD28P10747 220 aa11.18□□□□□ -0.62
USP4-206ENST00000461553 SERPINA2P20848 420 aa11.18□□□□□ -0.62
USP4-206ENST00000461553 C21orf33P30042 268 aaPredicted RBP11.18□□□□□ -0.62
USP4-206ENST00000461553 BDKRB2P30411 391 aa11.18□□□□□ -0.62
USP4-206ENST00000461553 BLCAPP62952 87 aa11.18□□□□□ -0.62
USP4-206ENST00000461553 RIPK1Q13546 671 aa11.18□□□□□ -0.62
USP4-206ENST00000461553 RCN1Q15293 331 aa11.18□□□□□ -0.62
USP4-206ENST00000461553 RSBN1Q5VWQ0 802 aaPredicted RBP11.18□□□□□ -0.62
USP4-206ENST00000461553 LINC00596Q86U02 117 aa11.18□□□□□ -0.62
USP4-206ENST00000461553 LYG1Q8N1E2 194 aa11.18□□□□□ -0.62
USP4-206ENST00000461553 OR4F17Q8NGA8 305 aa11.18□□□□□ -0.62
USP4-206ENST00000461553 OR13A1Q8NGR1 328 aa11.18□□□□□ -0.62
USP4-206ENST00000461553 OR52N1Q8NH53 320 aa11.18□□□□□ -0.62
USP4-206ENST00000461553 TOMM40LQ969M1 308 aa11.18□□□□□ -0.62
USP4-206ENST00000461553 RPEQ96AT9 228 aa11.18□□□□□ -0.62
USP4-206ENST00000461553 TMEM80Q96HE8 168 aa11.18□□□□□ -0.62
USP4-206ENST00000461553 OR4F4Q96R69 305 aa11.18□□□□□ -0.62
USP4-206ENST00000461553 WNT10AQ9GZT5 417 aa11.18□□□□□ -0.62
USP4-206ENST00000461553 MMP28Q9H239 520 aa11.18□□□□□ -0.62
USP4-206ENST00000461553 NCOR1P1Q9H4R4 102 aa11.18□□□□□ -0.62
USP4-206ENST00000461553 PCDHB16Q9NRJ7 776 aa11.18□□□□□ -0.62
USP4-206ENST00000461553 PAK1IP1Q9NWT1 392 aaPredicted RBP11.18□□□□□ -0.62
USP4-206ENST00000461553 IL36GQ9NZH8 169 aa11.18□□□□□ -0.62
USP4-206ENST00000461553 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.18□□□□□ -0.62
USP4-206ENST00000461553 ST3GAL6Q9Y274 331 aa11.18□□□□□ -0.62
USP4-206ENST00000461553 CD24P25063 80 aa11.17□□□□□ -0.62
USP4-206ENST00000461553 RBM11P57052 281 aaKnown RBP11.17□□□□□ -0.62
USP4-206ENST00000461553 TAS2R43P59537 309 aa11.17□□□□□ -0.62
USP4-206ENST00000461553 PAX5Q02548 391 aa11.17□□□□□ -0.62
USP4-206ENST00000461553 YIF1BQ5BJH7 314 aa11.17□□□□□ -0.62
USP4-206ENST00000461553 NHLRC3Q5JS37 347 aa11.17□□□□□ -0.62
USP4-206ENST00000461553 OSR2Q8N2R0 312 aa11.17□□□□□ -0.62
USP4-206ENST00000461553 DHRSXQ8N5I4 330 aa11.17□□□□□ -0.62
USP4-206ENST00000461553 OR13C5Q8NGS8 318 aa11.17□□□□□ -0.62
USP4-206ENST00000461553 PLPPR1Q8TBJ4 325 aa11.17□□□□□ -0.62
USP4-206ENST00000461553 MRGPRDQ8TDS7 321 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms