RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 ERVK-16P61578 105 aa10.1□□□□□ -0.79
NPHP4-204ENST00000460696 RPS16P62249 146 aaKnown RBP10.1□□□□□ -0.79
NPHP4-204ENST00000460696 RNPS1Q15287 305 aaKnown RBP10.1□□□□□ -0.79
NPHP4-204ENST00000460696 ZNF239Q16600 458 aaKnown RBP10.1□□□□□ -0.79
NPHP4-204ENST00000460696 UQCC3Q6UW78 93 aa10.1□□□□□ -0.79
NPHP4-204ENST00000460696 LIAT1Q6ZQX7 453 aa10.1□□□□□ -0.79
NPHP4-204ENST00000460696 RFESDQ8TAC1 157 aa10.1□□□□□ -0.79
NPHP4-204ENST00000460696 SLC2A8Q9NY64 477 aa10.1□□□□□ -0.79
NPHP4-204ENST00000460696 TRAV14DV4A0A0A6YYC5 116 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 MFSD2BA6NFX1 497 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 MPGP29372 298 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 PTGER4P35408 488 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 SUCLG1P53597 346 aaKnown RBP10.09□□□□□ -0.79
NPHP4-204ENST00000460696 OR2B8PP59922 312 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 GUK1Q16774 197 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 LY6G6FQ5SQ64 297 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 OR2C3Q8N628 320 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 OR5C1Q8NGR4 320 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 CCL28Q9NRJ3 127 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 UQCC1Q9NVA1 299 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 GNG13Q9P2W3 67 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 LPAR3Q9UBY5 353 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 RAB19A4D1S5 217 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 C5orf63A6NC05 138 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 IRF2P14316 349 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 RAB11AP62491 216 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 ALKBH6Q3KRA9 238 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 TBC1D26Q86UD7 250 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 GAPTQ8N292 157 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 TMEM251Q8N6I4 163 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 DEFB108BQ8NET1 73 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 SLC39A9Q9NUM3 307 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 CHD9Q3L8U1 2897 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 RNF212BA8MTL3 300 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 H7C1Q1 480 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 MPPED1O15442 326 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 KRASP01116 189 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 MELTFP08582 738 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 TAGLN2P37802 199 aaKnown RBP10.09□□□□□ -0.79
NPHP4-204ENST00000460696 NPBWR2P48146 333 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 IL34Q6ZMJ4 242 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 SSX9Q7RTT3 188 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 OVCH2Q7RTZ1 564 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 FADS6Q8N9I5 356 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 RXFP4Q8TDU9 374 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 TTTY12Q9BZ98 90 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 RIMS4Q9H426 269 aaPredicted RBP10.09□□□□□ -0.79
NPHP4-204ENST00000460696 CADP27708 2225 aa10.09□□□□□ -0.79
NPHP4-204ENST00000460696 MSGN1A6NI15 193 aa10.08□□□□□ -0.8
NPHP4-204ENST00000460696 TRIM77I1YAP6 450 aa10.08□□□□□ -0.8
NPHP4-204ENST00000460696 DFFBO76075 338 aa10.08□□□□□ -0.8
NPHP4-204ENST00000460696 CELA3AP09093 270 aa10.08□□□□□ -0.8
NPHP4-204ENST00000460696 ZNF735P0CB33 412 aa10.08□□□□□ -0.8
NPHP4-204ENST00000460696 HOXA6P31267 233 aa10.08□□□□□ -0.8
NPHP4-204ENST00000460696 C10orf128Q5T292 105 aa10.08□□□□□ -0.8
NPHP4-204ENST00000460696 FAM185AQ8N0U4 392 aa10.08□□□□□ -0.8
NPHP4-204ENST00000460696 NIPSNAP3BQ9BS92 247 aa10.08□□□□□ -0.8
NPHP4-204ENST00000460696 AMDHD2Q9Y303 409 aa10.08□□□□□ -0.8
NPHP4-204ENST00000460696 ABCA2Q9BZC7 2435 aa10.08□□□□□ -0.8
NPHP4-204ENST00000460696 NKX2-6A6NCS4 301 aa10.08□□□□□ -0.8
NPHP4-204ENST00000460696 VSTM5A8MXK1 200 aa10.08□□□□□ -0.8
NPHP4-204ENST00000460696 KLF7O75840 302 aaPredicted RBP10.08□□□□□ -0.8
NPHP4-204ENST00000460696 HBE1P02100 147 aa10.08□□□□□ -0.8
NPHP4-204ENST00000460696 CYC1P08574 325 aa10.08□□□□□ -0.8
NPHP4-204ENST00000460696 DTYMKP23919 212 aa10.08□□□□□ -0.8
NPHP4-204ENST00000460696 ALDH3B1P43353 468 aa10.08□□□□□ -0.8
NPHP4-204ENST00000460696 SRSF6Q13247 344 aaKnown RBP10.08□□□□□ -0.8
NPHP4-204ENST00000460696 HMGN3Q15651 99 aa10.08□□□□□ -0.8
NPHP4-204ENST00000460696 SMUG1Q53HV7 270 aa10.08□□□□□ -0.8
NPHP4-204ENST00000460696 SLC25A53Q5H9E4 307 aa10.08□□□□□ -0.8
NPHP4-204ENST00000460696 C19orf12Q9NSK7 152 aa10.08□□□□□ -0.8
NPHP4-204ENST00000460696 PCNX3Q9H6A9 2034 aa10.08□□□□□ -0.8
NPHP4-204ENST00000460696 KIAA1549LQ6ZVL6 1849 aa10.08□□□□□ -0.8
NPHP4-204ENST00000460696 CDIPTO14735 213 aa10.08□□□□□ -0.8
NPHP4-204ENST00000460696 IFNA4P05014 189 aa10.08□□□□□ -0.8
NPHP4-204ENST00000460696 RBM11P57052 281 aaKnown RBP10.08□□□□□ -0.8
NPHP4-204ENST00000460696 BAXQ07812 192 aa10.08□□□□□ -0.8
NPHP4-204ENST00000460696 FAM166AQ6J272 317 aa10.08□□□□□ -0.8
NPHP4-204ENST00000460696 OR5B12Q96R08 314 aa10.08□□□□□ -0.8
NPHP4-204ENST00000460696 GPR87Q9BY21 358 aa10.08□□□□□ -0.8
NPHP4-204ENST00000460696 WNT5BQ9H1J7 359 aa10.08□□□□□ -0.8
NPHP4-204ENST00000460696 NGFP01138 241 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 IFNA10P01566 189 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 CD8AP01732 235 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 NHLH2Q02577 135 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 GUCA2BQ16661 112 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 SLC35G3Q8N808 338 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 Q96M66 194 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 GPR37O15354 613 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 C1QL1O75973 258 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 NFYBP25208 207 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 SOX8P57073 446 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 FAM3AP98173 230 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 ZNF816Q0VGE8 651 aaPredicted RBP10.07□□□□□ -0.8
NPHP4-204ENST00000460696 SARAFQ96BY9 339 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 PRRC2CQ9Y520 2896 aaKnown RBP10.07□□□□□ -0.8
NPHP4-204ENST00000460696 LRRK2Q5S007 2527 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 DOCK10Q96BY6 2186 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 A0A0U1RQK1 487 aa10.07□□□□□ -0.8
NPHP4-204ENST00000460696 CDRT15L2A8MXV6 281 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms