RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 LRRC46Q96FV0 321 aa12.87□□□□□ -0.35
LDLR-202ENST00000455727 NARS2Q96I59 477 aaKnown RBP12.87□□□□□ -0.35
LDLR-202ENST00000455727 ARV1Q9H2C2 271 aa12.87□□□□□ -0.35
LDLR-202ENST00000455727 ARID1AO14497 2285 aa12.86□□□□□ -0.35
LDLR-202ENST00000455727 GPR31O00270 319 aa12.86□□□□□ -0.35
LDLR-202ENST00000455727 GALR2O43603 387 aaPredicted RBP12.86□□□□□ -0.35
LDLR-202ENST00000455727 HERPUD1Q15011 391 aa12.86□□□□□ -0.35
LDLR-202ENST00000455727 TSC22D1Q15714 1073 aa12.86□□□□□ -0.35
LDLR-202ENST00000455727 OR2T2Q6IF00 324 aa12.86□□□□□ -0.35
LDLR-202ENST00000455727 ZNF880Q6PDB4 577 aa12.86□□□□□ -0.35
LDLR-202ENST00000455727 ATRAIDQ6UW56 229 aa12.86□□□□□ -0.35
LDLR-202ENST00000455727 P4HA3Q7Z4N8 544 aa12.86□□□□□ -0.35
LDLR-202ENST00000455727 SLC35G3Q8N808 338 aa12.86□□□□□ -0.35
LDLR-202ENST00000455727 ZNF565Q8N9K5 539 aa12.86□□□□□ -0.35
LDLR-202ENST00000455727 BOLLQ8N9W6 283 aaKnown RBP12.86□□□□□ -0.35
LDLR-202ENST00000455727 OR4D5Q8NGN0 318 aa12.86□□□□□ -0.35
LDLR-202ENST00000455727 NEK7Q8TDX7 302 aa12.86□□□□□ -0.35
LDLR-202ENST00000455727 CLCF1Q9UBD9 225 aa12.86□□□□□ -0.35
LDLR-202ENST00000455727 PRELID1Q9Y255 219 aa12.86□□□□□ -0.35
LDLR-202ENST00000455727 J3QT63 122 aa12.85□□□□□ -0.35
LDLR-202ENST00000455727 GPR137BO60478 399 aa12.85□□□□□ -0.35
LDLR-202ENST00000455727 ATG12O94817 140 aa12.85□□□□□ -0.35
LDLR-202ENST00000455727 GLI4P10075 376 aa12.85□□□□□ -0.35
LDLR-202ENST00000455727 CA6P23280 308 aa12.85□□□□□ -0.35
LDLR-202ENST00000455727 BLOC1S1P78537 153 aa12.85□□□□□ -0.35
LDLR-202ENST00000455727 FAM76BQ5HYJ3 339 aa12.85□□□□□ -0.35
LDLR-202ENST00000455727 C10orf91Q5T1B1 145 aa12.85□□□□□ -0.35
LDLR-202ENST00000455727 IGFL2Q6UWQ7 119 aa12.85□□□□□ -0.35
LDLR-202ENST00000455727 TBC1D26Q86UD7 250 aa12.85□□□□□ -0.35
LDLR-202ENST00000455727 OR52M1Q8NGK5 317 aa12.85□□□□□ -0.35
LDLR-202ENST00000455727 MRPL30Q8TCC3 161 aaKnown RBP12.85□□□□□ -0.35
LDLR-202ENST00000455727 TRAV24A0A0B4J272 114 aa12.85□□□□□ -0.35
LDLR-202ENST00000455727 DUXBA0A1W2PPF3 345 aa12.85□□□□□ -0.35
LDLR-202ENST00000455727 RCC1P18754 421 aaPredicted RBP12.85□□□□□ -0.35
LDLR-202ENST00000455727 DEFA5Q01523 94 aa12.85□□□□□ -0.35
LDLR-202ENST00000455727 RTL8AQ9BWD3 113 aa12.85□□□□□ -0.35
LDLR-202ENST00000455727 POMT1Q9Y6A1 747 aa12.85□□□□□ -0.35
LDLR-202ENST00000455727 IGKV1-6A0A0C4DH72 117 aa12.84□□□□□ -0.35
LDLR-202ENST00000455727 ABCD4O14678 606 aa12.84□□□□□ -0.35
LDLR-202ENST00000455727 NKX2-8O15522 239 aa12.84□□□□□ -0.35
LDLR-202ENST00000455727 CNOT4O95628 575 aaKnown RBP12.84□□□□□ -0.35
LDLR-202ENST00000455727 HOXB1P14653 301 aaPredicted RBP12.84□□□□□ -0.35
LDLR-202ENST00000455727 IL32P24001 234 aa12.84□□□□□ -0.35
LDLR-202ENST00000455727 PCSK4Q6UW60 755 aa12.84□□□□□ -0.35
LDLR-202ENST00000455727 OR4A4PQ8NGN8 299 aa12.84□□□□□ -0.35
LDLR-202ENST00000455727 SECTM1Q8WVN6 248 aa12.84□□□□□ -0.35
LDLR-202ENST00000455727 USB1Q9BQ65 265 aaKnown RBP12.84□□□□□ -0.35
LDLR-202ENST00000455727 PARP11Q9NR21 331 aa12.84□□□□□ -0.35
LDLR-202ENST00000455727 TREM2Q9NZC2 230 aa12.84□□□□□ -0.35
LDLR-202ENST00000455727 UBE2J1Q9Y385 318 aaPredicted RBP12.84□□□□□ -0.35
LDLR-202ENST00000455727 LRP5LA4QPB2 252 aa12.84□□□□□ -0.35
LDLR-202ENST00000455727 SMPD2O60906 423 aa12.84□□□□□ -0.35
LDLR-202ENST00000455727 FTH1P19P0C7X4 201 aa12.84□□□□□ -0.35
LDLR-202ENST00000455727 CTRB1P17538 263 aa12.84□□□□□ -0.35
LDLR-202ENST00000455727 IGHV1-2P23083 117 aa12.84□□□□□ -0.35
LDLR-202ENST00000455727 UBE2NP61088 152 aaKnown RBP12.84□□□□□ -0.35
LDLR-202ENST00000455727 GUSBP1Q15486 140 aa12.84□□□□□ -0.35
LDLR-202ENST00000455727 CTRB2Q6GPI1 263 aa12.84□□□□□ -0.35
LDLR-202ENST00000455727 MEX3BQ6ZN04 569 aaKnown RBP12.84□□□□□ -0.35
LDLR-202ENST00000455727 ZNF818PQ6ZRF7 136 aa12.84□□□□□ -0.35
LDLR-202ENST00000455727 Q8IYB0 196 aa12.84□□□□□ -0.35
LDLR-202ENST00000455727 GAPTQ8N292 157 aa12.84□□□□□ -0.35
LDLR-202ENST00000455727 DMBX1Q8NFW5 382 aa12.84□□□□□ -0.35
LDLR-202ENST00000455727 ERGIC1Q969X5 290 aa12.84□□□□□ -0.35
LDLR-202ENST00000455727 ABHD14BQ96IU4 210 aa12.84□□□□□ -0.35
LDLR-202ENST00000455727 ZNF488Q96MN9 340 aa12.84□□□□□ -0.35
LDLR-202ENST00000455727 SPIN2AQ99865 258 aa12.84□□□□□ -0.35
LDLR-202ENST00000455727 SPIN2BQ9BPZ2 258 aa12.84□□□□□ -0.35
LDLR-202ENST00000455727 OR51B6Q9H340 312 aa12.84□□□□□ -0.35
LDLR-202ENST00000455727 ASCL3Q9NQ33 180 aa12.84□□□□□ -0.35
LDLR-202ENST00000455727 HSPB6O14558 160 aa12.83□□□□□ -0.36
LDLR-202ENST00000455727 CAV2P51636 162 aa12.83□□□□□ -0.36
LDLR-202ENST00000455727 PPP1CBP62140 327 aa12.83□□□□□ -0.36
LDLR-202ENST00000455727 PMP22Q01453 160 aa12.83□□□□□ -0.36
LDLR-202ENST00000455727 SPIN3Q5JUX0 258 aa12.83□□□□□ -0.36
LDLR-202ENST00000455727 FAM122CQ6P4D5 195 aa12.83□□□□□ -0.36
LDLR-202ENST00000455727 INO80CQ6PI98 192 aaPredicted RBP12.83□□□□□ -0.36
LDLR-202ENST00000455727 FAM214BQ7L5A3 538 aa12.83□□□□□ -0.36
LDLR-202ENST00000455727 ZNF695Q8IW36 515 aa12.83□□□□□ -0.36
LDLR-202ENST00000455727 SVBPQ8N300 66 aa12.83□□□□□ -0.36
LDLR-202ENST00000455727 FDCSPQ8NFU4 85 aa12.83□□□□□ -0.36
LDLR-202ENST00000455727 BOD1Q96IK1 185 aa12.83□□□□□ -0.36
LDLR-202ENST00000455727 NKX6-2Q9C056 277 aaPredicted RBP12.83□□□□□ -0.36
LDLR-202ENST00000455727 DLL3Q9NYJ7 618 aa12.83□□□□□ -0.36
LDLR-202ENST00000455727 CARHSP1Q9Y2V2 147 aaKnown RBP12.83□□□□□ -0.36
LDLR-202ENST00000455727 CELSR3Q9NYQ7 3312 aa12.83□□□□□ -0.36
LDLR-202ENST00000455727 BORCS7-ASMTA0A0B4J1R7 106 aa12.83□□□□□ -0.36
LDLR-202ENST00000455727 IGKV1D-13A0A0B4J2D9 117 aa12.83□□□□□ -0.36
LDLR-202ENST00000455727 CLEC18AA5D8T8 446 aa12.83□□□□□ -0.36
LDLR-202ENST00000455727 DNASE2O00115 360 aaPredicted RBP12.83□□□□□ -0.36
LDLR-202ENST00000455727 HS3ST1O14792 307 aa12.83□□□□□ -0.36
LDLR-202ENST00000455727 MED6O75586 246 aa12.83□□□□□ -0.36
LDLR-202ENST00000455727 SEC11BP0C7V7 166 aa12.83□□□□□ -0.36
LDLR-202ENST00000455727 IGKV1-13P0DP09 117 aa12.83□□□□□ -0.36
LDLR-202ENST00000455727 RAC2P15153 192 aa12.83□□□□□ -0.36
LDLR-202ENST00000455727 UCP1P25874 307 aa12.83□□□□□ -0.36
LDLR-202ENST00000455727 MDH2P40926 338 aaKnown RBP12.83□□□□□ -0.36
LDLR-202ENST00000455727 LPAR6P43657 344 aa12.83□□□□□ -0.36
LDLR-202ENST00000455727 CCL11P51671 97 aa12.83□□□□□ -0.36
LDLR-202ENST00000455727 GNMTQ14749 295 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms