RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 CIARTQ8N365 385 aaPredicted RBP13.08□□□□□ -0.32
USP40-206ENST00000443711 ARHGAP5-AS1Q96IT6 56 aa13.08□□□□□ -0.32
USP40-206ENST00000443711 FAAP24Q9BTP7 215 aa13.08□□□□□ -0.32
USP40-206ENST00000443711 PECRQ9BY49 303 aa13.08□□□□□ -0.32
USP40-206ENST00000443711 TEX15Q9BXT5 2789 aa13.08□□□□□ -0.32
USP40-206ENST00000443711 DSCAML1Q8TD84 2053 aa13.08□□□□□ -0.32
USP40-206ENST00000443711 ABCA2Q9BZC7 2435 aa13.07□□□□□ -0.32
USP40-206ENST00000443711 KIAA1324LA8MWY0 1029 aaPredicted RBP13.07□□□□□ -0.32
USP40-206ENST00000443711 SMAD7O15105 426 aaKnown RBP13.07□□□□□ -0.32
USP40-206ENST00000443711 CA11O75493 328 aa13.07□□□□□ -0.32
USP40-206ENST00000443711 CDK2P24941 298 aa13.07□□□□□ -0.32
USP40-206ENST00000443711 EDDM3BP56851 147 aa13.07□□□□□ -0.32
USP40-206ENST00000443711 AESQ08117 197 aa13.07□□□□□ -0.32
USP40-206ENST00000443711 EDDM3AQ14507 147 aa13.07□□□□□ -0.32
USP40-206ENST00000443711 CDNFQ49AH0 187 aa13.07□□□□□ -0.32
USP40-206ENST00000443711 PLAC9Q5JTB6 97 aa13.07□□□□□ -0.32
USP40-206ENST00000443711 KRBOX4Q5JUW0 171 aa13.07□□□□□ -0.32
USP40-206ENST00000443711 LINC01356Q8N9X3 169 aa13.07□□□□□ -0.32
USP40-206ENST00000443711 PLPPR1Q8TBJ4 325 aa13.07□□□□□ -0.32
USP40-206ENST00000443711 SULT4A1Q9BR01 284 aa13.07□□□□□ -0.32
USP40-206ENST00000443711 DCTN5Q9BTE1 182 aa13.07□□□□□ -0.32
USP40-206ENST00000443711 MIXL1Q9H2W2 232 aa13.07□□□□□ -0.32
USP40-206ENST00000443711 NCOR1P1Q9H4R4 102 aa13.07□□□□□ -0.32
USP40-206ENST00000443711 ING3Q9NXR8 418 aa13.07□□□□□ -0.32
USP40-206ENST00000443711 ETAA1Q9NY74 926 aa13.07□□□□□ -0.32
USP40-206ENST00000443711 POLR3KQ9Y2Y1 108 aaPredicted RBP13.07□□□□□ -0.32
USP40-206ENST00000443711 KIAA2026Q5HYC2 2103 aa13.06□□□□□ -0.32
USP40-206ENST00000443711 FLNAP21333 2647 aaKnown RBP13.06□□□□□ -0.32
USP40-206ENST00000443711 TRAV18A0A075B6X5 111 aa13.06□□□□□ -0.32
USP40-206ENST00000443711 TRBV23-1A0A0A0MS06 115 aa13.06□□□□□ -0.32
USP40-206ENST00000443711 XRCC3O43542 346 aa13.06□□□□□ -0.32
USP40-206ENST00000443711 MSMBP08118 114 aa13.06□□□□□ -0.32
USP40-206ENST00000443711 IGHV4-31P0DP07 118 aa13.06□□□□□ -0.32
USP40-206ENST00000443711 HIST1H1DP16402 221 aaKnown RBP13.06□□□□□ -0.32
USP40-206ENST00000443711 P2RX3P56373 397 aa13.06□□□□□ -0.32
USP40-206ENST00000443711 RPL31P62899 125 aaKnown RBP13.06□□□□□ -0.32
USP40-206ENST00000443711 PAX5Q02548 391 aa13.06□□□□□ -0.32
USP40-206ENST00000443711 MEF2CQ06413 473 aaPredicted RBP13.06□□□□□ -0.32
USP40-206ENST00000443711 RSBN1Q5VWQ0 802 aaPredicted RBP13.06□□□□□ -0.32
USP40-206ENST00000443711 SLC35E4Q6ICL7 350 aa13.06□□□□□ -0.32
USP40-206ENST00000443711 OR4M1Q8NGD0 313 aa13.06□□□□□ -0.32
USP40-206ENST00000443711 C8orf46Q8TAG6 207 aa13.06□□□□□ -0.32
USP40-206ENST00000443711 COQ2Q96H96 371 aa13.06□□□□□ -0.32
USP40-206ENST00000443711 COX4I2Q96KJ9 171 aa13.06□□□□□ -0.32
USP40-206ENST00000443711 LPAR2Q9HBW0 351 aa13.06□□□□□ -0.32
USP40-206ENST00000443711 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.06□□□□□ -0.32
USP40-206ENST00000443711 LPAR3Q9UBY5 353 aa13.06□□□□□ -0.32
USP40-206ENST00000443711 RPUSD1Q9UJJ7 312 aaKnown RBP13.06□□□□□ -0.32
USP40-206ENST00000443711 WNK2Q9Y3S1 2297 aa13.06□□□□□ -0.32
USP40-206ENST00000443711 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.06□□□□□ -0.32
USP40-206ENST00000443711 hADV38S2A0JD32 116 aa13.05□□□□□ -0.32
USP40-206ENST00000443711 TMEM30CPA0ZSE6 113 aa13.05□□□□□ -0.32
USP40-206ENST00000443711 SERPINE3A8MV23 424 aa13.05□□□□□ -0.32
USP40-206ENST00000443711 MFNGO00587 321 aa13.05□□□□□ -0.32
USP40-206ENST00000443711 GSTP1P09211 210 aaKnown RBP13.05□□□□□ -0.32
USP40-206ENST00000443711 GNB3P16520 340 aa13.05□□□□□ -0.32
USP40-206ENST00000443711 S100A5P33763 92 aa13.05□□□□□ -0.32
USP40-206ENST00000443711 TALDO1P37837 337 aa13.05□□□□□ -0.32
USP40-206ENST00000443711 GLIPR1P48060 266 aa13.05□□□□□ -0.32
USP40-206ENST00000443711 ZNF260Q3ZCT1 412 aa13.05□□□□□ -0.32
USP40-206ENST00000443711 TMEM69Q5SWH9 247 aa13.05□□□□□ -0.32
USP40-206ENST00000443711 CYB5R2Q6BCY4 276 aa13.05□□□□□ -0.32
USP40-206ENST00000443711 ZNF497Q6ZNH5 498 aa13.05□□□□□ -0.32
USP40-206ENST00000443711 LAX1Q8IWV1 398 aa13.05□□□□□ -0.32
USP40-206ENST00000443711 FAM185AQ8N0U4 392 aa13.05□□□□□ -0.32
USP40-206ENST00000443711 C18orf12Q96KH6 178 aa13.05□□□□□ -0.32
USP40-206ENST00000443711 DMRTB1Q96MA1 342 aa13.05□□□□□ -0.32
USP40-206ENST00000443711 RIMS4Q9H426 269 aaPredicted RBP13.05□□□□□ -0.32
USP40-206ENST00000443711 C19orf12Q9NSK7 152 aa13.05□□□□□ -0.32
USP40-206ENST00000443711 AK3Q9UIJ7 227 aa13.05□□□□□ -0.32
USP40-206ENST00000443711 KIF25Q9UIL4 384 aa13.05□□□□□ -0.32
USP40-206ENST00000443711 MEIKINA0A087WXM9 373 aa13.04□□□□□ -0.32
USP40-206ENST00000443711 TRAV20A0A0B4J274 112 aa13.04□□□□□ -0.32
USP40-206ENST00000443711 PPIAL4CA0A0B4J2A2 164 aa13.04□□□□□ -0.32
USP40-206ENST00000443711 A0A1W2PQ09 198 aa13.04□□□□□ -0.32
USP40-206ENST00000443711 ODAMA1E959 279 aa13.04□□□□□ -0.32
USP40-206ENST00000443711 C22orf46C9J442 243 aa13.04□□□□□ -0.32
USP40-206ENST00000443711 ENSAO43768 121 aaKnown RBP13.04□□□□□ -0.32
USP40-206ENST00000443711 CLPXO76031 633 aa13.04□□□□□ -0.32
USP40-206ENST00000443711 MT-ND4P03905 459 aa13.04□□□□□ -0.32
USP40-206ENST00000443711 LIPFP07098 398 aa13.04□□□□□ -0.32
USP40-206ENST00000443711 CD3GP09693 182 aa13.04□□□□□ -0.32
USP40-206ENST00000443711 PPIAL4GP0DN37 164 aa13.04□□□□□ -0.32
USP40-206ENST00000443711 MNDAP41218 407 aa13.04□□□□□ -0.32
USP40-206ENST00000443711 MRPS15P82914 257 aaKnown RBP13.04□□□□□ -0.32
USP40-206ENST00000443711 ARFRP1Q13795 201 aa13.04□□□□□ -0.32
USP40-206ENST00000443711 PNLIPRP3Q17RR3 467 aa13.04□□□□□ -0.32
USP40-206ENST00000443711 OLFML2AQ68BL7 652 aa13.04□□□□□ -0.32
USP40-206ENST00000443711 RTN4RL2Q86UN3 420 aa13.04□□□□□ -0.32
USP40-206ENST00000443711 IZUMO1Q8IYV9 350 aa13.04□□□□□ -0.32
USP40-206ENST00000443711 GAPTQ8N292 157 aa13.04□□□□□ -0.32
USP40-206ENST00000443711 TPRX1Q8N7U7 411 aa13.04□□□□□ -0.32
USP40-206ENST00000443711 DTX3Q8N9I9 347 aa13.04□□□□□ -0.32
USP40-206ENST00000443711 LY6G5BQ8NDX9 201 aa13.04□□□□□ -0.32
USP40-206ENST00000443711 MSI2Q96DH6 328 aaKnown RBP13.04□□□□□ -0.32
USP40-206ENST00000443711 DIRAS2Q96HU8 199 aa13.04□□□□□ -0.32
USP40-206ENST00000443711 CMSS1Q9BQ75 279 aaKnown RBP13.04□□□□□ -0.32
USP40-206ENST00000443711 AUNIPQ9H7T9 357 aa13.04□□□□□ -0.32
USP40-206ENST00000443711 ZMAT3Q9HA38 289 aaKnown RBP13.04□□□□□ -0.32
USP40-206ENST00000443711 OR6C3Q9NZP0 311 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms