RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, human

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-208	ENST00000443046	OR6C3	Q9NZP0	311 aa		11.22	□□□□□ -0.61
HMGN1-208	ENST00000443046	ALMS1	Q8TCU4	4167 aa		11.21	□□□□□ -0.61
HMGN1-208	ENST00000443046	NPIPB11	E5RHQ5	1161 aa		11.21	□□□□□ -0.61
HMGN1-208	ENST00000443046	ZNF670-ZNF695	F2Z2N8	137 aa		11.21	□□□□□ -0.61
HMGN1-208	ENST00000443046	SNX3	O60493	162 aa		11.21	□□□□□ -0.61
HMGN1-208	ENST00000443046	RPP14	O95059	124 aa	Known RBP	11.21	□□□□□ -0.61
HMGN1-208	ENST00000443046	ANXA8	P13928	327 aa		11.21	□□□□□ -0.61
HMGN1-208	ENST00000443046	PRKACG	P22612	351 aa		11.21	□□□□□ -0.61
HMGN1-208	ENST00000443046	PSMB8	P28062	276 aa		11.21	□□□□□ -0.61
HMGN1-208	ENST00000443046	POU3F4	P49335	361 aa		11.21	□□□□□ -0.61
HMGN1-208	ENST00000443046	MTCP1	P56278	107 aa		11.21	□□□□□ -0.61
HMGN1-208	ENST00000443046	ZNF816	Q0VGE8	651 aa	Predicted RBP	11.21	□□□□□ -0.61
HMGN1-208	ENST00000443046	KIAA0141	Q14154	515 aa	Predicted RBP	11.21	□□□□□ -0.61
HMGN1-208	ENST00000443046	SLC16A12	Q6ZSM3	486 aa		11.21	□□□□□ -0.61
HMGN1-208	ENST00000443046	UTS2B	Q765I0	119 aa		11.21	□□□□□ -0.61
HMGN1-208	ENST00000443046	ZNF429	Q86V71	674 aa		11.21	□□□□□ -0.61
HMGN1-208	ENST00000443046	PRSS35	Q8N3Z0	413 aa		11.21	□□□□□ -0.61
HMGN1-208	ENST00000443046	OR11H1	Q8NG94	326 aa		11.21	□□□□□ -0.61
HMGN1-208	ENST00000443046	OR51T1	Q8NGJ9	327 aa		11.21	□□□□□ -0.61
HMGN1-208	ENST00000443046	HAVCR2	Q8TDQ0	301 aa		11.21	□□□□□ -0.61
HMGN1-208	ENST00000443046	LEAP2	Q969E1	77 aa		11.21	□□□□□ -0.61
HMGN1-208	ENST00000443046	RNF166	Q96A37	237 aa	Predicted RBP	11.21	□□□□□ -0.61
HMGN1-208	ENST00000443046	ADAT3	Q96EY9	351 aa	Predicted RBP	11.21	□□□□□ -0.61
HMGN1-208	ENST00000443046	EAF1	Q96JC9	268 aa	Predicted RBP	11.21	□□□□□ -0.61
HMGN1-208	ENST00000443046	TM2D3	Q9BRN9	247 aa		11.21	□□□□□ -0.61
HMGN1-208	ENST00000443046	OSBPL10	Q9BXB5	764 aa		11.21	□□□□□ -0.61
HMGN1-208	ENST00000443046	ZMAT4	Q9H898	229 aa		11.21	□□□□□ -0.61
HMGN1-208	ENST00000443046	RHOF	Q9HBH0	211 aa		11.21	□□□□□ -0.61
HMGN1-208	ENST00000443046	ZNF580	Q9UK33	172 aa		11.21	□□□□□ -0.61
HMGN1-208	ENST00000443046		I3L521	148 aa		11.2	□□□□□ -0.62
HMGN1-208	ENST00000443046	LY86	O95711	162 aa		11.2	□□□□□ -0.62
HMGN1-208	ENST00000443046	IGHV3-7	P01780	117 aa		11.2	□□□□□ -0.62
HMGN1-208	ENST00000443046	HCK	P08631	526 aa		11.2	□□□□□ -0.62
HMGN1-208	ENST00000443046	ATF1	P18846	271 aa		11.2	□□□□□ -0.62
HMGN1-208	ENST00000443046	PRKACB	P22694	351 aa		11.2	□□□□□ -0.62
HMGN1-208	ENST00000443046	CRISP1	P54107	249 aa		11.2	□□□□□ -0.62
HMGN1-208	ENST00000443046	RUNX1	Q01196	453 aa		11.2	□□□□□ -0.62
HMGN1-208	ENST00000443046	ATXN7L3	Q14CW9	347 aa	Predicted RBP	11.2	□□□□□ -0.62
HMGN1-208	ENST00000443046	CDK5R1	Q15078	307 aa		11.2	□□□□□ -0.62
HMGN1-208	ENST00000443046	NXNL2	Q5VZ03	156 aa		11.2	□□□□□ -0.62
HMGN1-208	ENST00000443046	LHFPL2	Q6ZUX7	228 aa		11.2	□□□□□ -0.62
HMGN1-208	ENST00000443046	IZUMO1	Q8IYV9	350 aa		11.2	□□□□□ -0.62
HMGN1-208	ENST00000443046	ADGRG5	Q8IZF4	528 aa		11.2	□□□□□ -0.62
HMGN1-208	ENST00000443046	ARHGAP24	Q8N264	748 aa		11.2	□□□□□ -0.62
HMGN1-208	ENST00000443046	YIPF7	Q8N8F6	280 aa		11.2	□□□□□ -0.62
HMGN1-208	ENST00000443046	ZNF565	Q8N9K5	539 aa		11.2	□□□□□ -0.62
HMGN1-208	ENST00000443046	OR13A1	Q8NGR1	328 aa		11.2	□□□□□ -0.62
HMGN1-208	ENST00000443046	CALY	Q9NYX4	217 aa		11.2	□□□□□ -0.62
HMGN1-208	ENST00000443046	IDI2-AS1	Q9NZ38	188 aa		11.2	□□□□□ -0.62
HMGN1-208	ENST00000443046	IGHV1-3	A0A0C4DH29	117 aa		11.19	□□□□□ -0.62
HMGN1-208	ENST00000443046	LOC107986453	A0A1B0GWG9	222 aa		11.19	□□□□□ -0.62
HMGN1-208	ENST00000443046	NCBP2L	A6PVI3	153 aa	Known RBP	11.19	□□□□□ -0.62
HMGN1-208	ENST00000443046	SULT1C4	O75897	302 aa		11.19	□□□□□ -0.62
HMGN1-208	ENST00000443046	IL1A	P01583	271 aa		11.19	□□□□□ -0.62
HMGN1-208	ENST00000443046	IGF1	P05019	195 aa		11.19	□□□□□ -0.62
HMGN1-208	ENST00000443046	KRT8	P05787	483 aa		11.19	□□□□□ -0.62
HMGN1-208	ENST00000443046	ZNF44	P15621	663 aa		11.19	□□□□□ -0.62
HMGN1-208	ENST00000443046	ISL1	P61371	349 aa		11.19	□□□□□ -0.62
HMGN1-208	ENST00000443046	PAX5	Q02548	391 aa		11.19	□□□□□ -0.62
HMGN1-208	ENST00000443046	PTGES3	Q15185	160 aa	Known RBP	11.19	□□□□□ -0.62
HMGN1-208	ENST00000443046	FAM27D1	Q5T7N8	215 aa		11.19	□□□□□ -0.62
HMGN1-208	ENST00000443046	ADAMTSL5	Q6ZMM2	481 aa		11.19	□□□□□ -0.62
HMGN1-208	ENST00000443046	RDH10	Q8IZV5	341 aa		11.19	□□□□□ -0.62
HMGN1-208	ENST00000443046	FAM71E2	Q8N5Q1	922 aa		11.19	□□□□□ -0.62
HMGN1-208	ENST00000443046	OR10A7	Q8NGE5	316 aa		11.19	□□□□□ -0.62
HMGN1-208	ENST00000443046	ZNF446	Q9NWS9	450 aa		11.19	□□□□□ -0.62
HMGN1-208	ENST00000443046	ING3	Q9NXR8	418 aa		11.19	□□□□□ -0.62
HMGN1-208	ENST00000443046	PCLO	Q9Y6V0	5065 aa		11.18	□□□□□ -0.62
HMGN1-208	ENST00000443046	METTL15	A6NJ78	407 aa		11.18	□□□□□ -0.62
HMGN1-208	ENST00000443046	HSD17B6	O14756	317 aa		11.18	□□□□□ -0.62
HMGN1-208	ENST00000443046	MPZL2	O60487	215 aa		11.18	□□□□□ -0.62
HMGN1-208	ENST00000443046	MT-ND2	P03891	347 aa		11.18	□□□□□ -0.62
HMGN1-208	ENST00000443046	OR8U8	P0C7N1	319 aa		11.18	□□□□□ -0.62
HMGN1-208	ENST00000443046	KIR3DL2	P43630	455 aa		11.18	□□□□□ -0.62
HMGN1-208	ENST00000443046	VEGFC	P49767	419 aa		11.18	□□□□□ -0.62
HMGN1-208	ENST00000443046	SCN1B	Q07699	218 aa		11.18	□□□□□ -0.62
HMGN1-208	ENST00000443046	SAXO1	Q8IYX7	474 aa		11.18	□□□□□ -0.62
HMGN1-208	ENST00000443046	TMEM104	Q8NE00	496 aa		11.18	□□□□□ -0.62
HMGN1-208	ENST00000443046	OR1N2	Q8NGR9	330 aa		11.18	□□□□□ -0.62
HMGN1-208	ENST00000443046	OR2T10	Q8NGZ9	312 aa		11.18	□□□□□ -0.62
HMGN1-208	ENST00000443046	SPSB1	Q96BD6	273 aa		11.18	□□□□□ -0.62
HMGN1-208	ENST00000443046	RNFT2	Q96EX2	444 aa		11.18	□□□□□ -0.62
HMGN1-208	ENST00000443046	UBE2E2	Q96LR5	201 aa		11.18	□□□□□ -0.62
HMGN1-208	ENST00000443046	OPALIN	Q96PE5	141 aa		11.18	□□□□□ -0.62
HMGN1-208	ENST00000443046	HSPB9	Q9BQS6	159 aa		11.18	□□□□□ -0.62
HMGN1-208	ENST00000443046	ADI1	Q9BV57	179 aa		11.18	□□□□□ -0.62
HMGN1-208	ENST00000443046	KRT84	Q9NSB2	600 aa		11.18	□□□□□ -0.62
HMGN1-208	ENST00000443046		A0A1W2PQL4	384 aa	Predicted RBP	11.17	□□□□□ -0.62
HMGN1-208	ENST00000443046	GNGT2	O14610	69 aa		11.17	□□□□□ -0.62
HMGN1-208	ENST00000443046	DEGS1	O15121	323 aa		11.17	□□□□□ -0.62
HMGN1-208	ENST00000443046	RRP9	O43818	475 aa	Known RBP	11.17	□□□□□ -0.62
HMGN1-208	ENST00000443046	GAPDH	P04406	335 aa	Known RBP	11.17	□□□□□ -0.62
HMGN1-208	ENST00000443046	UBC	P0CG48	685 aa	Known RBP	11.17	□□□□□ -0.62
HMGN1-208	ENST00000443046	SPN	P16150	400 aa		11.17	□□□□□ -0.62
HMGN1-208	ENST00000443046	C21orf33	P30042	268 aa	Predicted RBP	11.17	□□□□□ -0.62
HMGN1-208	ENST00000443046	PPIF	P30405	207 aa	Known RBP	11.17	□□□□□ -0.62
HMGN1-208	ENST00000443046	HTR1F	P30939	366 aa		11.17	□□□□□ -0.62
HMGN1-208	ENST00000443046	GLP1R	P43220	463 aa		11.17	□□□□□ -0.62
HMGN1-208	ENST00000443046	MNAT1	P51948	309 aa		11.17	□□□□□ -0.62
HMGN1-208	ENST00000443046	MOB3B	Q86TA1	216 aa		11.17	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms