RNA–Protein interactions for RNA: ENST00000442708.5

USP39-205, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-205ENST00000442708 TPRA1Q86W33 373 aa13.15□□□□□ -0.3
USP39-205ENST00000442708 KCNG3Q8TAE7 436 aa13.15□□□□□ -0.3
USP39-205ENST00000442708 NANPQ8TBE9 248 aa13.15□□□□□ -0.3
USP39-205ENST00000442708 CST11Q9H112 138 aa13.15□□□□□ -0.3
USP39-205ENST00000442708 SIRT7Q9NRC8 400 aa13.15□□□□□ -0.3
USP39-205ENST00000442708 RCC2Q9P258 522 aaKnown RBP13.15□□□□□ -0.3
USP39-205ENST00000442708 TRAV40A0A0B4J280 105 aa13.14□□□□□ -0.31
USP39-205ENST00000442708 TMEM272A0A1B0GTI8 110 aa13.14□□□□□ -0.31
USP39-205ENST00000442708 AIPO00170 330 aa13.14□□□□□ -0.31
USP39-205ENST00000442708 MEF2CQ06413 473 aaPredicted RBP13.14□□□□□ -0.31
USP39-205ENST00000442708 KLRD1Q13241 179 aa13.14□□□□□ -0.31
USP39-205ENST00000442708 KRBOX4Q5JUW0 171 aa13.14□□□□□ -0.31
USP39-205ENST00000442708 RSBN1Q5VWQ0 802 aaPredicted RBP13.14□□□□□ -0.31
USP39-205ENST00000442708 GDPGP1Q6ZNW5 385 aa13.14□□□□□ -0.31
USP39-205ENST00000442708 PPP1R35Q8TAP8 253 aa13.14□□□□□ -0.31
USP39-205ENST00000442708 TNFRSF14Q92956 283 aa13.14□□□□□ -0.31
USP39-205ENST00000442708 TMEM59Q9BXS4 323 aa13.14□□□□□ -0.31
USP39-205ENST00000442708 LPAR5Q9H1C0 372 aa13.14□□□□□ -0.31
USP39-205ENST00000442708 FBLN5Q9UBX5 448 aa13.14□□□□□ -0.31
USP39-205ENST00000442708 CUBNO60494 3623 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 TRAV39A0A0B4J263 110 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 CENPVL3A0A0U1RRI6 287 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 ODAMA1E959 279 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 FAM90A10PA6NDY2 464 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 FAM90A18PA6NE21 464 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 FAM90A16PA6NEW6 464 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 FAM90A20PA6NIJ5 464 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 FAM90A8PA6NJQ4 464 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 FAM90A7PA6NKC0 464 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 NOTOA8MTQ0 251 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 C17orf98A8MV24 154 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 FAM90A22PA8MWA6 464 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 FAM90A12PA8MX19 464 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 FAM90A5PA8MXJ8 464 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 FAM90A23PA8MXZ1 464 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 M0R1W7 72 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 FAM90A15PP0C7V4 464 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 FAM90A13PP0C7W8 464 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 FAM90A14PP0C7W9 464 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 FAM90A24PP0C7X0 464 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 EFNB2P52799 333 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 TIMM50Q3ZCQ8 353 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 RUSC1-AS1Q66K80 236 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 RAB12Q6IQ22 244 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 HCP5Q6MZN7 132 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 C1orf122Q6ZSJ8 110 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 OR2W3Q7Z3T1 314 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 PRIMA1Q86XR5 153 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 PDZD9Q8IXQ8 264 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 BCL6BQ8N143 479 aaPredicted RBP13.13□□□□□ -0.31
USP39-205ENST00000442708 C22orf15Q8WYQ4 148 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 DYRK2Q92630 601 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 LHX4Q969G2 390 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 TM2D1Q9BX74 207 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 LIN7BQ9HAP6 207 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 ZNF69Q9UC07 566 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 KIF25Q9UIL4 384 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 NUP50Q9UKX7 468 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 PEX16Q9Y5Y5 336 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 LINC00312Q9Y6C7 94 aa13.13□□□□□ -0.31
USP39-205ENST00000442708 RNASEK-C17orf49H0YIS7 233 aa13.12□□□□□ -0.31
USP39-205ENST00000442708 MMP23AO75900 390 aa13.12□□□□□ -0.31
USP39-205ENST00000442708 ZNF728P0DKX0 622 aa13.12□□□□□ -0.31
USP39-205ENST00000442708 FUT3P21217 361 aa13.12□□□□□ -0.31
USP39-205ENST00000442708 EPHA1P21709 976 aa13.12□□□□□ -0.31
USP39-205ENST00000442708 NCS1P62166 190 aa13.12□□□□□ -0.31
USP39-205ENST00000442708 PAX5Q02548 391 aa13.12□□□□□ -0.31
USP39-205ENST00000442708 SFXN4Q6P4A7 337 aa13.12□□□□□ -0.31
USP39-205ENST00000442708 BRD3OSQ6XYD6 125 aa13.12□□□□□ -0.31
USP39-205ENST00000442708 CMTM4Q8IZR5 234 aa13.12□□□□□ -0.31
USP39-205ENST00000442708 CORO2AQ92828 525 aa13.12□□□□□ -0.31
USP39-205ENST00000442708 UNKLQ9H9P5 680 aaKnown RBP13.12□□□□□ -0.31
USP39-205ENST00000442708 DAPK2Q9UIK4 370 aa13.12□□□□□ -0.31
USP39-205ENST00000442708 JMJD1CQ15652 2540 aa13.12□□□□□ -0.31
USP39-205ENST00000442708 hADV38S2A0JD32 116 aa13.11□□□□□ -0.31
USP39-205ENST00000442708 UBE2QL1A1L167 161 aa13.11□□□□□ -0.31
USP39-205ENST00000442708 FOXI3A8MTJ6 420 aaPredicted RBP13.11□□□□□ -0.31
USP39-205ENST00000442708 SOCS1O15524 211 aa13.11□□□□□ -0.31
USP39-205ENST00000442708 PDCD6O75340 191 aa13.11□□□□□ -0.31
USP39-205ENST00000442708 CGB3P0DN86 165 aa13.11□□□□□ -0.31
USP39-205ENST00000442708 CGB7P0DN87 165 aa13.11□□□□□ -0.31
USP39-205ENST00000442708 SNRPBP14678 240 aaKnown RBP13.11□□□□□ -0.31
USP39-205ENST00000442708 PRTN3P24158 256 aa13.11□□□□□ -0.31
USP39-205ENST00000442708 CHATP28329 748 aa13.11□□□□□ -0.31
USP39-205ENST00000442708 RPS19P39019 145 aaKnown RBP13.11□□□□□ -0.31
USP39-205ENST00000442708 VBP1P61758 197 aa13.11□□□□□ -0.31
USP39-205ENST00000442708 TUSC1Q2TAM9 212 aa13.11□□□□□ -0.31
USP39-205ENST00000442708 GPR107Q5VW38 600 aa13.11□□□□□ -0.31
USP39-205ENST00000442708 BAIAP2L2Q6UXY1 529 aa13.11□□□□□ -0.31
USP39-205ENST00000442708 ANKRD13BQ86YJ7 626 aa13.11□□□□□ -0.31
USP39-205ENST00000442708 PNKDQ8N490 385 aa13.11□□□□□ -0.31
USP39-205ENST00000442708 FAM89BQ8N5H3 189 aa13.11□□□□□ -0.31
USP39-205ENST00000442708 OR13A1Q8NGR1 328 aa13.11□□□□□ -0.31
USP39-205ENST00000442708 ZNF714Q96N38 554 aa13.11□□□□□ -0.31
USP39-205ENST00000442708 SULT4A1Q9BR01 284 aa13.11□□□□□ -0.31
USP39-205ENST00000442708 METTL8Q9H825 291 aaKnown RBP13.11□□□□□ -0.31
USP39-205ENST00000442708 UBE2J1Q9Y385 318 aaPredicted RBP13.11□□□□□ -0.31
USP39-205ENST00000442708 MEIKINA0A087WXM9 373 aa13.1□□□□□ -0.31
USP39-205ENST00000442708 IGHV1-69DA0A0B4J2H0 117 aa13.1□□□□□ -0.31
USP39-205ENST00000442708 A0A1W2PRD5 423 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms