RNA–Protein interactions for RNA: ENST00000439977.6

HERPUD1-204, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HERPUD1, Length 2,946 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-204ENST00000439977 HIST1H2BAQ96A08 127 aa11.64□□□□□ -0.55
HERPUD1-204ENST00000439977 RSRP1Q9BUV0 290 aa11.64□□□□□ -0.55
HERPUD1-204ENST00000439977 SCRT1Q9BWW7 348 aa11.64□□□□□ -0.55
HERPUD1-204ENST00000439977 CCL28Q9NRJ3 127 aa11.64□□□□□ -0.55
HERPUD1-204ENST00000439977 PUS1Q9Y606 427 aaKnown RBP eCLIP11.64□□□□□ -0.55
HERPUD1-204ENST00000439977 CYC1P08574 325 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 SEC11BP0C7V7 166 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 EPHA1P21709 976 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 RUNX1Q01196 453 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 DCAF12Q5T6F0 453 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 LINC00696Q6ZRV3 163 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 DPPA2Q7Z7J5 298 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 PRR18Q8N4B5 295 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 BOD1L1Q8NFC6 3051 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 LYPD6BQ8NI32 183 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 TMEM171Q8WVE6 324 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 PSMF1Q92530 271 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 BOD1Q96IK1 185 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 KLF2Q9Y5W3 355 aaPredicted RBP11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 A0A1W2PPE2 198 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 CYTIPO60759 359 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 TK1P04183 234 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 OR2B8PP59922 312 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 FOXO1Q12778 655 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 KRTAP27-1Q3LI81 207 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 TMEM211Q6ICI0 200 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 ADAM5Q6NVV9 412 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 RBMS3Q6XE24 437 aaKnown RBP11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 C20orf204Q6ZNR8 217 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 MRPL21Q7Z2W9 205 aaKnown RBP11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 CCDC71LQ8N9Z2 235 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 OR4D5Q8NGN0 318 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 OR2G3Q8NGZ4 309 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 CPNE4Q96A23 557 aaPredicted RBP11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 GINS3Q9BRX5 216 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 TMED3Q9Y3Q3 217 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 KPTNQ9Y664 436 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 ZNF724A8MTY0 619 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 TMEM50AO95807 157 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 HEXAP06865 529 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 FBP1P09467 338 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 GFRA1P56159 465 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 IL13RA2Q14627 380 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 SPATA46Q5T0L3 261 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 GPR157Q5UAW9 335 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 LRTM2Q8N967 370 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 IL1F10Q8WWZ1 152 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 C1QTNF5Q9BXJ0 243 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 TMEM222Q9H0R3 208 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 ARV1Q9H2C2 271 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 COA4Q9NYJ1 87 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 LOXL2Q9Y4K0 774 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 POMT1Q9Y6A1 747 aa11.63□□□□□ -0.55
HERPUD1-204ENST00000439977 RPL36A-HNRNPH2H7BZ11 118 aa11.62□□□□□ -0.55
HERPUD1-204ENST00000439977 DNPH1O43598 174 aa11.62□□□□□ -0.55
HERPUD1-204ENST00000439977 EIF3GO75821 320 aaKnown RBP eCLIP11.62□□□□□ -0.55
HERPUD1-204ENST00000439977 ATP6V0CP27449 155 aa11.62□□□□□ -0.55
HERPUD1-204ENST00000439977 MAGEA5P43359 124 aa11.62□□□□□ -0.55
HERPUD1-204ENST00000439977 RIPPLY2Q5TAB7 128 aa11.62□□□□□ -0.55
HERPUD1-204ENST00000439977 OR5C1Q8NGR4 320 aa11.62□□□□□ -0.55
HERPUD1-204ENST00000439977 KCNJ16Q9NPI9 418 aa11.62□□□□□ -0.55
HERPUD1-204ENST00000439977 SPENQ96T58 3664 aaKnown RBP11.62□□□□□ -0.55
HERPUD1-204ENST00000439977 IGKV1-6A0A0C4DH72 117 aa11.62□□□□□ -0.55
HERPUD1-204ENST00000439977 ARGFXA6NJG6 315 aa11.62□□□□□ -0.55
HERPUD1-204ENST00000439977 SLC22A20A6NK97 555 aa11.62□□□□□ -0.55
HERPUD1-204ENST00000439977 TRDCB7Z8K6 153 aa11.62□□□□□ -0.55
HERPUD1-204ENST00000439977 PROB1E7EW31 1015 aa11.62□□□□□ -0.55
HERPUD1-204ENST00000439977 DUSP3P51452 185 aaPredicted RBP11.62□□□□□ -0.55
HERPUD1-204ENST00000439977 HAGHQ16775 308 aa11.62□□□□□ -0.55
HERPUD1-204ENST00000439977 OR51H1Q8NH63 302 aa11.62□□□□□ -0.55
HERPUD1-204ENST00000439977 GLRX2Q9NS18 164 aa11.62□□□□□ -0.55
HERPUD1-204ENST00000439977 LAMTOR5O43504 91 aa11.61□□□□□ -0.55
HERPUD1-204ENST00000439977 ZNF100Q8IYN0 542 aa11.61□□□□□ -0.55
HERPUD1-204ENST00000439977 LILRB1Q8NHL6 650 aaPredicted RBP11.61□□□□□ -0.55
HERPUD1-204ENST00000439977 C12orf49Q9H741 205 aa11.61□□□□□ -0.55
HERPUD1-204ENST00000439977 IL36GQ9NZH8 169 aa11.61□□□□□ -0.55
HERPUD1-204ENST00000439977 DOCK10Q96BY6 2186 aa11.61□□□□□ -0.55
HERPUD1-204ENST00000439977 RAB5BP61020 215 aa11.61□□□□□ -0.55
HERPUD1-204ENST00000439977 RAB1AP62820 205 aa11.61□□□□□ -0.55
HERPUD1-204ENST00000439977 VAMP2P63027 116 aa11.61□□□□□ -0.55
HERPUD1-204ENST00000439977 TRA2AQ13595 282 aaKnown RBP eCLIP11.61□□□□□ -0.55
HERPUD1-204ENST00000439977 C6orf15Q6UXA7 325 aaPredicted RBP11.61□□□□□ -0.55
HERPUD1-204ENST00000439977 SLC16A13Q7RTY0 426 aa11.61□□□□□ -0.55
HERPUD1-204ENST00000439977 P4HA3Q7Z4N8 544 aa11.61□□□□□ -0.55
HERPUD1-204ENST00000439977 SELENOHQ8IZQ5 122 aaKnown RBP11.61□□□□□ -0.55
HERPUD1-204ENST00000439977 TMEM252Q8N6L7 170 aa11.61□□□□□ -0.55
HERPUD1-204ENST00000439977 REPIN1Q9BWE0 567 aaKnown RBP11.61□□□□□ -0.55
HERPUD1-204ENST00000439977 Q9N2K0 584 aa11.61□□□□□ -0.55
HERPUD1-204ENST00000439977 PQLC2LA1A4F0 135 aa11.6□□□□□ -0.55
HERPUD1-204ENST00000439977 C1orf196B1AJZ1 125 aa11.6□□□□□ -0.55
HERPUD1-204ENST00000439977 S100A6P06703 90 aa11.6□□□□□ -0.55
HERPUD1-204ENST00000439977 JMJD7P0C870 316 aa11.6□□□□□ -0.55
HERPUD1-204ENST00000439977 UCP3P55916 312 aa11.6□□□□□ -0.55
HERPUD1-204ENST00000439977 ZNF154Q13106 437 aa11.6□□□□□ -0.55
HERPUD1-204ENST00000439977 CDX2Q99626 313 aaPredicted RBP11.6□□□□□ -0.55
HERPUD1-204ENST00000439977 ZNF391Q9UJN7 358 aa11.6□□□□□ -0.55
HERPUD1-204ENST00000439977 TRAPPC2LH3BP13 241 aa11.6□□□□□ -0.55
HERPUD1-204ENST00000439977 CHST1O43916 411 aa11.6□□□□□ -0.55
HERPUD1-204ENST00000439977 PTAFRP25105 342 aa11.6□□□□□ -0.55
HERPUD1-204ENST00000439977 DYNLT3P51808 116 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms