RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 COX14Q96I36 57 aa10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 C10orf90Q96M02 699 aa10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 PATE3B3GLJ2 98 aa10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 MPZL1O95297 269 aa10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 PRR35P0CG20 571 aa10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 GGTLC2Q14390 218 aa10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 NKG7Q16617 165 aa10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 LINC00303Q3SY05 128 aa10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 OR1L1Q8NH94 360 aa10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 NAA60Q9H7X0 242 aa10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 SLC25A10Q9UBX3 287 aaPredicted RBP10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 NHLH1Q02575 133 aa10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 NHLH2Q02577 135 aa10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 RRN3P1Q2M238 152 aa10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 ZNF429Q86V71 674 aa10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 FGF20Q9NP95 211 aaPredicted RBP10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 KIAA1324LA8MWY0 1029 aaPredicted RBP10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 CTAG2O75638 210 aa10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 TSPO2Q5TGU0 170 aa10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 FAHD2BQ6P2I3 314 aaPredicted RBP10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 AMER3Q8N944 861 aa10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 FLYWCH2Q96CP2 140 aaKnown RBP10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 FAHD2AQ96GK7 314 aa10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 AUP1Q9Y679 476 aa10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 CD40P25942 277 aa10.65□□□□□ -0.71
CCDC88A-207ENST00000436346 ZNF154Q13106 437 aa10.65□□□□□ -0.71
CCDC88A-207ENST00000436346 INSL4Q14641 139 aa10.65□□□□□ -0.71
CCDC88A-207ENST00000436346 RNF165Q6ZSG1 346 aa10.65□□□□□ -0.71
CCDC88A-207ENST00000436346 ZNF683Q8IZ20 524 aa10.65□□□□□ -0.71
CCDC88A-207ENST00000436346 RELL2Q8NC24 303 aaPredicted RBP10.65□□□□□ -0.71
CCDC88A-207ENST00000436346 NKX2-2O95096 273 aa10.65□□□□□ -0.71
CCDC88A-207ENST00000436346 G6PCP35575 357 aa10.65□□□□□ -0.71
CCDC88A-207ENST00000436346 PMELP40967 661 aa10.65□□□□□ -0.71
CCDC88A-207ENST00000436346 OR3A1P47881 315 aa10.65□□□□□ -0.71
CCDC88A-207ENST00000436346 UCNP55089 124 aa10.65□□□□□ -0.71
CCDC88A-207ENST00000436346 ZNF707Q96C28 371 aaPredicted RBP10.65□□□□□ -0.71
CCDC88A-207ENST00000436346 VAMP8Q9BV40 100 aa10.65□□□□□ -0.71
CCDC88A-207ENST00000436346 MSL2Q9HCI7 577 aa10.65□□□□□ -0.71
CCDC88A-207ENST00000436346 CLN8Q9UBY8 286 aa10.65□□□□□ -0.71
CCDC88A-207ENST00000436346 C16orf97H3BN30 126 aa10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 CDKN2AP42771 156 aaKnown RBP10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 RPS4XP62701 263 aaKnown RBP10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 ZBTB37Q5TC79 503 aa10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 DGAT2L7PQ6IED9 249 aa10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 YIPF6Q96EC8 236 aa10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 MRPL37Q9BZE1 423 aaKnown RBP10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 ZNF275Q9NSD4 429 aaPredicted RBP10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 TRAPPC4Q9Y296 219 aa10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 ORM1P02763 201 aa10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 PAFAH1B2P68402 229 aa10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 ZNF768Q9H5H4 540 aaKnown RBP10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 CA10Q9NS85 328 aa10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 C1RLQ9NZP8 487 aa10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 TEX50A0A1B0GTY4 177 aa10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 KHDC3LQ587J8 217 aa10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 COMMD1Q8N668 190 aa10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 ZG16BQ96DA0 208 aa10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 GMPPAQ96IJ6 420 aaPredicted RBP10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 MS4A7Q9GZW8 240 aaPredicted RBP10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 GPR27Q9NS67 375 aa10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 YBX1P67809 324 aaKnown RBP10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 ZNF141Q15928 474 aa10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 GTF2H5Q6ZYL4 71 aa10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 KCNK15Q9H427 330 aa10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 STARD10Q9Y365 291 aa10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 PDCD6O75340 191 aa10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 CT62P0C5K7 136 aa10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 UBE2L3P68036 154 aaKnown RBP10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 TBC1D26Q86UD7 250 aa10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 SPICQ8N5J4 248 aa10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 DUSP18Q8NEJ0 188 aa10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 TMEM18Q96B42 140 aa10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 NTMQ9P121 344 aa10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 PJVKQ0ZLH3 352 aa10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 KCNMB1Q16558 191 aa10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 DCAF10Q5QP82 559 aa10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 TMEM171Q8WVE6 324 aa10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 COLQQ9Y215 455 aaPredicted RBP10.64□□□□□ -0.71
CCDC88A-207ENST00000436346 PTBP3O95758 552 aaKnown RBP10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 CCL3P10147 92 aa10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 AVPR2P30518 371 aa10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 SLC26A10Q8NG04 563 aa10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 CUL9Q8IWT3 2517 aa10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 MAP6Q96JE9 813 aa10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 MED19A0JLT2 244 aaPredicted RBP10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 HIST1H3AP68431 136 aa10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 GPR137Q96N19 417 aa10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 PIMREGQ9BSJ6 248 aa10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 OR2H1Q9GZK4 316 aa10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 WDR54Q9H977 334 aa10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 HIST1H1EP10412 219 aaKnown RBP10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 DHRS2Q13268 280 aa10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 STPG1Q5TH74 334 aa10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 R3HDM4Q96D70 268 aa10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 PARP11Q9NR21 331 aa10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 VSIG4Q9Y279 399 aa10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 CST2P09228 141 aa10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 RPL30P62888 115 aaKnown RBP10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 ZDHHC22Q8N966 263 aa10.63□□□□□ -0.71
CCDC88A-207ENST00000436346 INSIG2Q9Y5U4 225 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms