RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 NKX2-1P43699 371 aaPredicted RBP9.74□□□□□ -0.85
USP4-205ENST00000431357 FOXO1Q12778 655 aa9.74□□□□□ -0.85
USP4-205ENST00000431357 AKIRIN2Q53H80 203 aa9.74□□□□□ -0.85
USP4-205ENST00000431357 TRIM61Q5EBN2 209 aa9.74□□□□□ -0.85
USP4-205ENST00000431357 COLCA1Q6ZS62 124 aa9.74□□□□□ -0.85
USP4-205ENST00000431357 ZNF695Q8IW36 515 aa9.74□□□□□ -0.85
USP4-205ENST00000431357 ZFP82Q8N141 532 aa9.74□□□□□ -0.85
USP4-205ENST00000431357 OR1J1Q8NGS3 322 aa9.74□□□□□ -0.85
USP4-205ENST00000431357 EXTL1Q92935 676 aa9.74□□□□□ -0.85
USP4-205ENST00000431357 HLA-CQ95604 372 aa9.74□□□□□ -0.85
USP4-205ENST00000431357 PLEKHF2Q9H8W4 249 aa9.74□□□□□ -0.85
USP4-205ENST00000431357 UNKLQ9H9P5 680 aaKnown RBP9.74□□□□□ -0.85
USP4-205ENST00000431357 LHX6Q9UPM6 363 aa9.74□□□□□ -0.85
USP4-205ENST00000431357 MED12Q93074 2177 aa9.74□□□□□ -0.85
USP4-205ENST00000431357 PIGBOS1A0A0B4J2F0 54 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 BTBD17A6NE02 478 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 M0R036 132 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 HSPA12AO43301 675 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 PITX3O75364 302 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 TK1P04183 234 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 CTXN2P0C2S0 81 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 EDN3P14138 238 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 ZNF44P15621 663 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 AGAP20933 346 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 SNRPEP62304 92 aaKnown RBP9.73□□□□□ -0.85
USP4-205ENST00000431357 MEX3BQ6ZN04 569 aaKnown RBP9.73□□□□□ -0.85
USP4-205ENST00000431357 SLC25A26Q70HW3 274 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 HSD17B11Q8NBQ5 300 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 FGFBP3Q8TAT2 258 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 LINC00470Q9BZP3 86 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 Q9N2K0 584 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 A0A0G2JMM0 328 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 KIR2DS1A0A191URI9 304 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 A0A1W2PPB8 328 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 A0A1W2PRS3 328 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 CLEC18AA5D8T8 446 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 NKX2-6A6NCS4 301 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 LRRC3CA6NJW4 275 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 KIR3DP1A8MWS1 328 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 TRAPPC6AO75865 159 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 GNRHRP30968 328 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 KIR2DS4P43632 304 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 PRSS12P56730 875 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 RAB2AP61019 212 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 CLINT1Q14677 625 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 KIR2DS1Q14954 304 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 TMEM182Q6ZP80 229 aaPredicted RBP9.73□□□□□ -0.85
USP4-205ENST00000431357 TBC1D26Q86UD7 250 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 CALHM1Q8IU99 346 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 SELENOHQ8IZQ5 122 aaKnown RBP9.73□□□□□ -0.85
USP4-205ENST00000431357 CLEC18CQ8NCF0 446 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 NAXEQ8NCW5 288 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 C14orf144Q96I85 54 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 GPR61Q9BZJ8 451 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 SH3BGRL3Q9H299 93 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 TP53TG5Q9Y2B4 290 aa9.73□□□□□ -0.85
USP4-205ENST00000431357 B4E171 279 aa9.72□□□□□ -0.85
USP4-205ENST00000431357 CFIP05156 583 aa9.72□□□□□ -0.85
USP4-205ENST00000431357 GLI4P10075 376 aa9.72□□□□□ -0.85
USP4-205ENST00000431357 FGF12P61328 243 aa9.72□□□□□ -0.85
USP4-205ENST00000431357 VAMP2P63027 116 aa9.72□□□□□ -0.85
USP4-205ENST00000431357 C21orf62-AS1Q17RA5 79 aa9.72□□□□□ -0.85
USP4-205ENST00000431357 MPV17LQ2QL34 196 aa9.72□□□□□ -0.85
USP4-205ENST00000431357 WIPI1Q5MNZ9 446 aaPredicted RBP9.72□□□□□ -0.85
USP4-205ENST00000431357 ETV3LQ6ZN32 361 aa9.72□□□□□ -0.85
USP4-205ENST00000431357 Q6ZPA2 131 aa9.72□□□□□ -0.85
USP4-205ENST00000431357 PPP1R32Q7Z5V6 425 aa9.72□□□□□ -0.85
USP4-205ENST00000431357 FAM213BQ8TBF2 198 aa9.72□□□□□ -0.85
USP4-205ENST00000431357 IL22RA2Q969J5 263 aa9.72□□□□□ -0.85
USP4-205ENST00000431357 MALSU1Q96EH3 234 aa9.72□□□□□ -0.85
USP4-205ENST00000431357 REPIN1Q9BWE0 567 aaKnown RBP9.72□□□□□ -0.85
USP4-205ENST00000431357 SLC7A10Q9NS82 523 aa9.72□□□□□ -0.85
USP4-205ENST00000431357 LYRM2Q9NU23 88 aaPredicted RBP9.72□□□□□ -0.85
USP4-205ENST00000431357 P4HTMQ9NXG6 502 aa9.72□□□□□ -0.85
USP4-205ENST00000431357 IGKV3D-15A0A087WSY6 115 aa9.71□□□□□ -0.85
USP4-205ENST00000431357 FAM24AA6NFZ4 105 aa9.71□□□□□ -0.85
USP4-205ENST00000431357 ZNF587BE7ETH6 402 aa9.71□□□□□ -0.85
USP4-205ENST00000431357 TCAPO15273 167 aa9.71□□□□□ -0.85
USP4-205ENST00000431357 NAPSAO96009 420 aa9.71□□□□□ -0.85
USP4-205ENST00000431357 RFPL3SP0C7P2 107 aa9.71□□□□□ -0.85
USP4-205ENST00000431357 NPBWR2P48146 333 aa9.71□□□□□ -0.85
USP4-205ENST00000431357 FHITP49789 147 aa9.71□□□□□ -0.85
USP4-205ENST00000431357 BAXQ07812 192 aa9.71□□□□□ -0.85
USP4-205ENST00000431357 PDCD1Q15116 288 aa9.71□□□□□ -0.85
USP4-205ENST00000431357 SPIN3Q5JUX0 258 aa9.71□□□□□ -0.85
USP4-205ENST00000431357 RBMS3Q6XE24 437 aaKnown RBP9.71□□□□□ -0.85
USP4-205ENST00000431357 OR2G3Q8NGZ4 309 aa9.71□□□□□ -0.85
USP4-205ENST00000431357 GNPNAT1Q96EK6 184 aaPredicted RBP9.71□□□□□ -0.85
USP4-205ENST00000431357 RIMS4Q9H426 269 aaPredicted RBP9.71□□□□□ -0.85
USP4-205ENST00000431357 SDK1Q7Z5N4 2213 aa9.71□□□□□ -0.86
USP4-205ENST00000431357 MRPL33O75394 65 aaKnown RBP9.71□□□□□ -0.86
USP4-205ENST00000431357 TUSC2O75896 110 aa9.71□□□□□ -0.86
USP4-205ENST00000431357 C1QL1O75973 258 aa9.71□□□□□ -0.86
USP4-205ENST00000431357 SLC34A2O95436 690 aa9.71□□□□□ -0.86
USP4-205ENST00000431357 RAB5AP20339 215 aa9.71□□□□□ -0.86
USP4-205ENST00000431357 VDAC1P21796 283 aa9.71□□□□□ -0.86
USP4-205ENST00000431357 UCP1P25874 307 aa9.71□□□□□ -0.86
USP4-205ENST00000431357 GDF1P27539 372 aa9.71□□□□□ -0.86
USP4-205ENST00000431357 MAS1LP35410 378 aa9.71□□□□□ -0.86
USP4-205ENST00000431357 AKR1C3P42330 323 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms