RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 GPN1Q9HCN4 374 aaPredicted RBP5.03□□□□□ -1.6
HMGB3-202ENST00000419110 NECAP2Q9NVZ3 263 aa5.03□□□□□ -1.6
HMGB3-202ENST00000419110 CISD1Q9NZ45 108 aaKnown RBP5.03□□□□□ -1.6
HMGB3-202ENST00000419110 ELF5Q9UKW6 265 aaPredicted RBP5.03□□□□□ -1.6
HMGB3-202ENST00000419110 PPP1R3CQ9UQK1 317 aa5.03□□□□□ -1.6
HMGB3-202ENST00000419110 KCNK7Q9Y2U2 307 aa5.03□□□□□ -1.6
HMGB3-202ENST00000419110 ZNF462Q96JM2 2506 aa5.03□□□□□ -1.6
HMGB3-202ENST00000419110 KIAA2026Q5HYC2 2103 aa5.03□□□□□ -1.6
HMGB3-202ENST00000419110 DOCK11Q5JSL3 2073 aa5.03□□□□□ -1.6
HMGB3-202ENST00000419110 KMT2BQ9UMN6 2715 aaPredicted RBP5.03□□□□□ -1.6
HMGB3-202ENST00000419110 TRAV24A0A0B4J272 114 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 TMEM82A0PJX8 343 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 FUOMA2VDF0 154 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 OOEPA6NGQ2 149 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 POM121CA8CG34 1229 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 SLC33A1O00400 549 aaPredicted RBP5.02□□□□□ -1.61
HMGB3-202ENST00000419110 HS3ST1O14792 307 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 WNT9BO14905 357 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 C1QL1O75973 258 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 NAPSAO96009 420 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 PMP2P02689 132 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 TCRBP04435 133 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 RLN1P04808 185 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 TRAPPC2P0DI81 140 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 TRAPPC2BP0DI82 140 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 FPR2P25090 351 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 LOXP28300 417 aaPredicted RBP5.02□□□□□ -1.61
HMGB3-202ENST00000419110 DUSP1P28562 367 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 CFHR2P36980 270 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 TSPAN5P62079 268 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 CCL8P80075 99 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 KCNJ8Q15842 424 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 C6orf183Q5T699 404 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 Q6ZS49 121 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 AKAP14Q86UN6 197 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 GLCCI1Q86VQ1 547 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 ZDHHC22Q8N966 263 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 OR4D10Q8NGI6 311 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 MAFIPQ8WZ33 124 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 NEUROG1Q92886 237 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 SCGB3A2Q96PL1 93 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 SLC25A21Q9BQT8 299 aaPredicted RBP5.02□□□□□ -1.61
HMGB3-202ENST00000419110 MARVELD1Q9BSK0 173 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 FAAP24Q9BTP7 215 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 ST6GALNAC5Q9BVH7 336 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 FXYD6Q9H0Q3 95 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 RAB1BQ9H0U4 201 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 UBTD1Q9HAC8 227 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 GCM1Q9NP62 436 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 RAB9BQ9NP90 201 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 CBLN4Q9NTU7 201 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 TREM2Q9NZC2 230 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 ANXA10Q9UJ72 324 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 WIPI2Q9Y4P8 454 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 KLF2Q9Y5W3 355 aaPredicted RBP5.02□□□□□ -1.61
HMGB3-202ENST00000419110 ALG5Q9Y673 324 aa5.02□□□□□ -1.61
HMGB3-202ENST00000419110 IGHV3OR15-7A0A075B7D8 119 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 ELOA3CA0A087WX78 387 aaPredicted RBP5.01□□□□□ -1.61
HMGB3-202ENST00000419110 TRBV6-6A0A0A6YYG2 114 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 TRAV38-1A0A0B4J264 116 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 C7orf66A4D0T2 115 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 FAM221AA4D161 298 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 A6NNC1 897 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 OR2AT4A6NND4 320 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 LGALS8O00214 317 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 FABP7O15540 132 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 SSNA1O43805 119 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 CREBL2O60519 120 aaPredicted RBP5.01□□□□□ -1.61
HMGB3-202ENST00000419110 DIRAS3O95661 229 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 CYB5R3P00387 301 aaPredicted RBP5.01□□□□□ -1.61
HMGB3-202ENST00000419110 PLAUP00749 431 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 CTXN2P0C2S0 81 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 PGAM2P15259 253 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 MUC1P15941 1255 aaPredicted RBP5.01□□□□□ -1.61
HMGB3-202ENST00000419110 IGFBP2P18065 325 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 GABRA2P47869 451 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 OR3A1P47881 315 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 CEBPDP49716 269 aaPredicted RBP5.01□□□□□ -1.61
HMGB3-202ENST00000419110 RAB25P57735 213 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 SEC61A1P61619 476 aaKnown RBP5.01□□□□□ -1.61
HMGB3-202ENST00000419110 COL10A1Q03692 680 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 EDDM3AQ14507 147 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 DAZAP2Q15038 168 aaPredicted RBP5.01□□□□□ -1.61
HMGB3-202ENST00000419110 PDCD1Q15116 288 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 GRK1Q15835 563 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 SRSF7Q16629 238 aaKnown RBP eCLIP5.01□□□□□ -1.61
HMGB3-202ENST00000419110 METTL11BQ5VVY1 283 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 STUMQ69YW2 141 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 SFRP4Q6FHJ7 346 aaPredicted RBP5.01□□□□□ -1.61
HMGB3-202ENST00000419110 Q6P435 159 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 C11orf88Q6PI97 169 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 ZNF497Q6ZNH5 498 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 C20orf204Q6ZNR8 217 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 TMED4Q7Z7H5 227 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 PEG10Q86TG7 708 aaKnown RBP5.01□□□□□ -1.61
HMGB3-202ENST00000419110 DTX2Q86UW9 622 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 C11orf53Q8IXP5 236 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 GCSAMQ8N6F7 178 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 TMEM185AQ8NFB2 350 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 OR5AP2Q8NGF4 316 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms