RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 PUSL1Q8N0Z8 303 aaKnown RBP11.48□□□□□ -0.57
COL6A3-206ENST00000409809 HMGCLL1Q8TB92 370 aa11.48□□□□□ -0.57
COL6A3-206ENST00000409809 NPIPB8E9PQR5 432 aa11.48□□□□□ -0.57
COL6A3-206ENST00000409809 NPIPB7O75200 414 aa11.48□□□□□ -0.57
COL6A3-206ENST00000409809 RUNX3Q13761 415 aa11.48□□□□□ -0.57
COL6A3-206ENST00000409809 LINC01559Q495D7 138 aa11.48□□□□□ -0.57
COL6A3-206ENST00000409809 PTRH2Q9Y3E5 179 aaKnown RBP11.48□□□□□ -0.57
COL6A3-206ENST00000409809 NOVP48745 357 aa11.48□□□□□ -0.57
COL6A3-206ENST00000409809 HINT1P49773 126 aaPredicted RBP11.48□□□□□ -0.57
COL6A3-206ENST00000409809 HSD17B10Q99714 261 aaKnown RBP11.48□□□□□ -0.57
COL6A3-206ENST00000409809 A8MXK9 166 aa11.48□□□□□ -0.57
COL6A3-206ENST00000409809 PVRP15151 417 aa11.48□□□□□ -0.57
COL6A3-206ENST00000409809 IRF3Q14653 427 aa11.48□□□□□ -0.57
COL6A3-206ENST00000409809 RGS7BPQ6MZT1 257 aaPredicted RBP11.48□□□□□ -0.57
COL6A3-206ENST00000409809 PARS2Q7L3T8 475 aaKnown RBP11.48□□□□□ -0.57
COL6A3-206ENST00000409809 CTU1Q7Z7A3 348 aaKnown RBP11.48□□□□□ -0.57
COL6A3-206ENST00000409809 OR2V1Q8NHB1 315 aa11.48□□□□□ -0.57
COL6A3-206ENST00000409809 TRGC2P03986 189 aa11.48□□□□□ -0.57
COL6A3-206ENST00000409809 SOX4Q06945 474 aaPredicted RBP11.47□□□□□ -0.57
COL6A3-206ENST00000409809 ZNF770Q6IQ21 691 aaPredicted RBP11.47□□□□□ -0.57
COL6A3-206ENST00000409809 OR10S1Q8NGN2 331 aa11.47□□□□□ -0.57
COL6A3-206ENST00000409809 JKAMPQ9P055 326 aa11.47□□□□□ -0.57
COL6A3-206ENST00000409809 A0A1B0GW15 77 aa11.47□□□□□ -0.57
COL6A3-206ENST00000409809 TMEM255AQ5JRV8 349 aa11.47□□□□□ -0.57
COL6A3-206ENST00000409809 LRRTM3Q86VH5 581 aa11.47□□□□□ -0.57
COL6A3-206ENST00000409809 SNRNP40Q96DI7 357 aaKnown RBP11.47□□□□□ -0.57
COL6A3-206ENST00000409809 TXNRD2Q9NNW7 524 aa11.47□□□□□ -0.57
COL6A3-206ENST00000409809 ERVH48-1M5A8F1 160 aa11.47□□□□□ -0.57
COL6A3-206ENST00000409809 HOXD4P09016 255 aaPredicted RBP11.47□□□□□ -0.57
COL6A3-206ENST00000409809 RPS19BP1Q86WX3 136 aaKnown RBP11.47□□□□□ -0.57
COL6A3-206ENST00000409809 OR2Y1Q8NGV0 311 aa11.47□□□□□ -0.57
COL6A3-206ENST00000409809 TUBD1Q9UJT1 453 aa11.47□□□□□ -0.57
COL6A3-206ENST00000409809 PRKRAO75569 313 aaKnown RBP11.47□□□□□ -0.57
COL6A3-206ENST00000409809 MEF2CQ06413 473 aaPredicted RBP11.47□□□□□ -0.57
COL6A3-206ENST00000409809 LTC4SQ16873 150 aa11.47□□□□□ -0.57
COL6A3-206ENST00000409809 NFAM1Q8NET5 270 aaPredicted RBP11.47□□□□□ -0.57
COL6A3-206ENST00000409809 C4orf45Q96LM5 186 aa11.47□□□□□ -0.57
COL6A3-206ENST00000409809 ANAPC13Q9BS18 74 aa11.47□□□□□ -0.57
COL6A3-206ENST00000409809 H3BP45 60 aa11.47□□□□□ -0.57
COL6A3-206ENST00000409809 RND1Q92730 232 aa11.47□□□□□ -0.57
COL6A3-206ENST00000409809 ONECUT2O95948 504 aa11.47□□□□□ -0.57
COL6A3-206ENST00000409809 HOXD9P28356 352 aaPredicted RBP11.47□□□□□ -0.57
COL6A3-206ENST00000409809 ZNF117Q03924 483 aa11.47□□□□□ -0.57
COL6A3-206ENST00000409809 FAM53BQ14153 422 aa11.47□□□□□ -0.57
COL6A3-206ENST00000409809 IZUMO4Q1ZYL8 232 aa11.47□□□□□ -0.57
COL6A3-206ENST00000409809 LDLRAD3Q86YD5 345 aa11.47□□□□□ -0.57
COL6A3-206ENST00000409809 OR51B6Q9H340 312 aa11.47□□□□□ -0.57
COL6A3-206ENST00000409809 AMMECR1Q9Y4X0 333 aaPredicted RBP11.47□□□□□ -0.57
COL6A3-206ENST00000409809 NOTCH3Q9UM47 2321 aa11.47□□□□□ -0.57
COL6A3-206ENST00000409809 PTGESO14684 152 aa11.46□□□□□ -0.57
COL6A3-206ENST00000409809 OGG1O15527 345 aa11.46□□□□□ -0.57
COL6A3-206ENST00000409809 FAHP16930 419 aa11.46□□□□□ -0.57
COL6A3-206ENST00000409809 DMKNQ6E0U4 476 aaPredicted RBP11.46□□□□□ -0.57
COL6A3-206ENST00000409809 OR4C46A6NHA9 309 aa11.46□□□□□ -0.57
COL6A3-206ENST00000409809 CHST1O43916 411 aa11.46□□□□□ -0.57
COL6A3-206ENST00000409809 CTSVO60911 334 aa11.46□□□□□ -0.57
COL6A3-206ENST00000409809 HIKESHIQ53FT3 197 aa11.46□□□□□ -0.57
COL6A3-206ENST00000409809 ANKRD37Q7Z713 158 aa11.46□□□□□ -0.57
COL6A3-206ENST00000409809 PARP14Q460N5 1801 aa11.46□□□□□ -0.57
COL6A3-206ENST00000409809 MBLAC1A4D2B0 266 aaPredicted RBP11.46□□□□□ -0.57
COL6A3-206ENST00000409809 RBFOX2O43251 390 aaKnown RBP eCLIP11.46□□□□□ -0.57
COL6A3-206ENST00000409809 PSMG3Q9BT73 122 aaPredicted RBP11.46□□□□□ -0.57
COL6A3-206ENST00000409809 SOCS7O14512 581 aa11.46□□□□□ -0.57
COL6A3-206ENST00000409809 EIF3IQ13347 325 aaKnown RBP11.46□□□□□ -0.57
COL6A3-206ENST00000409809 PYCR3Q53H96 274 aa11.46□□□□□ -0.57
COL6A3-206ENST00000409809 FAM27D1Q5T7N8 215 aa11.46□□□□□ -0.57
COL6A3-206ENST00000409809 KMT5CQ86Y97 462 aa11.46□□□□□ -0.57
COL6A3-206ENST00000409809 TP53INP2Q8IXH6 220 aa11.46□□□□□ -0.57
COL6A3-206ENST00000409809 NUDT11Q96G61 164 aa11.46□□□□□ -0.57
COL6A3-206ENST00000409809 SGK494Q96LW2 274 aa11.46□□□□□ -0.57
COL6A3-206ENST00000409809 PRNDQ9UKY0 176 aa11.46□□□□□ -0.57
COL6A3-206ENST00000409809 DOCK1Q14185 1865 aa11.46□□□□□ -0.57
COL6A3-206ENST00000409809 LRRK1Q38SD2 2015 aa11.46□□□□□ -0.57
COL6A3-206ENST00000409809 FAM90A26D6RGX4 464 aa11.46□□□□□ -0.58
COL6A3-206ENST00000409809 PXNP49023 591 aaPredicted RBP11.46□□□□□ -0.58
COL6A3-206ENST00000409809 DEFB110Q30KQ9 67 aa11.46□□□□□ -0.58
COL6A3-206ENST00000409809 TCF24Q7RTU0 167 aa11.46□□□□□ -0.58
COL6A3-206ENST00000409809 MS4A7Q9GZW8 240 aaPredicted RBP11.46□□□□□ -0.58
COL6A3-206ENST00000409809 CBLN4Q9NTU7 201 aa11.46□□□□□ -0.58
COL6A3-206ENST00000409809 YLPM1P49750 1951 aaKnown RBP11.46□□□□□ -0.58
COL6A3-206ENST00000409809 LYPD8Q6UX82 237 aa11.46□□□□□ -0.58
COL6A3-206ENST00000409809 OR1F12Q8NHA8 337 aa11.46□□□□□ -0.58
COL6A3-206ENST00000409809 ASB5Q8WWX0 329 aa11.46□□□□□ -0.58
COL6A3-206ENST00000409809 A1L4Q6 167 aa11.46□□□□□ -0.58
COL6A3-206ENST00000409809 SH2D7A6NKC9 451 aaPredicted RBP11.46□□□□□ -0.58
COL6A3-206ENST00000409809 CYB561P49447 251 aa11.46□□□□□ -0.58
COL6A3-206ENST00000409809 GNB1P62873 340 aa11.46□□□□□ -0.58
COL6A3-206ENST00000409809 TEPPQ6URK8 271 aa11.46□□□□□ -0.58
COL6A3-206ENST00000409809 ALG14Q96F25 216 aa11.46□□□□□ -0.58
COL6A3-206ENST00000409809 MRGPRX3Q96LB0 322 aa11.46□□□□□ -0.58
COL6A3-206ENST00000409809 EFSO43281 561 aa11.45□□□□□ -0.58
COL6A3-206ENST00000409809 FGF8P55075 233 aaPredicted RBP11.45□□□□□ -0.58
COL6A3-206ENST00000409809 ZNF660Q6AZW8 331 aaPredicted RBP11.45□□□□□ -0.58
COL6A3-206ENST00000409809 MRPL24Q96A35 216 aaKnown RBP11.45□□□□□ -0.58
COL6A3-206ENST00000409809 TRIOBPQ9H2D6 2365 aa11.45□□□□□ -0.58
COL6A3-206ENST00000409809 C1QTNF9BB2RNN3 333 aa11.45□□□□□ -0.58
COL6A3-206ENST00000409809 OR10V1Q8NGI7 309 aa11.45□□□□□ -0.58
COL6A3-206ENST00000409809 DNAJC4Q9NNZ3 241 aa11.45□□□□□ -0.58
COL6A3-206ENST00000409809 H3BNC9 293 aa11.45□□□□□ -0.58
COL6A3-206ENST00000409809 CCL5P13501 91 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms