RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 ZDHHC23Q8IYP9 409 aa11.51□□□□□ -0.57
VPS54-203ENST00000409558 KIRREL1Q96J84 757 aa11.51□□□□□ -0.57
VPS54-203ENST00000409558 MYOZ1Q9NP98 299 aaPredicted RBP11.51□□□□□ -0.57
VPS54-203ENST00000409558 CD300LBA8K4G0 201 aa11.5□□□□□ -0.57
VPS54-203ENST00000409558 PROB1E7EW31 1015 aa11.5□□□□□ -0.57
VPS54-203ENST00000409558 GFRA1P56159 465 aa11.5□□□□□ -0.57
VPS54-203ENST00000409558 SLC10A1Q14973 349 aa11.5□□□□□ -0.57
VPS54-203ENST00000409558 ZNF826PQ6ZT77 177 aa11.5□□□□□ -0.57
VPS54-203ENST00000409558 HPSE2Q8WWQ2 592 aa11.5□□□□□ -0.57
VPS54-203ENST00000409558 INTS1Q8N201 2190 aaKnown RBP11.5□□□□□ -0.57
VPS54-203ENST00000409558 TUBAL3A6NHL2 446 aa11.5□□□□□ -0.57
VPS54-203ENST00000409558 CRYM-AS1A6NIL9 109 aa11.5□□□□□ -0.57
VPS54-203ENST00000409558 DNASE2O00115 360 aaPredicted RBP11.5□□□□□ -0.57
VPS54-203ENST00000409558 TERTO14746 1132 aaKnown RBP11.5□□□□□ -0.57
VPS54-203ENST00000409558 CYTIPO60759 359 aa11.5□□□□□ -0.57
VPS54-203ENST00000409558 SFTA3P0C7M3 94 aa11.5□□□□□ -0.57
VPS54-203ENST00000409558 CTSSP25774 331 aa11.5□□□□□ -0.57
VPS54-203ENST00000409558 KRBOX4Q5JUW0 171 aa11.5□□□□□ -0.57
VPS54-203ENST00000409558 C20orf204Q6ZNR8 217 aa11.5□□□□□ -0.57
VPS54-203ENST00000409558 ADGRG7Q96K78 797 aa11.5□□□□□ -0.57
VPS54-203ENST00000409558 ERRFI1Q9UJM3 462 aaPredicted RBP11.5□□□□□ -0.57
VPS54-203ENST00000409558 ABCA4P78363 2273 aa11.5□□□□□ -0.57
VPS54-203ENST00000409558 CDIPTO14735 213 aa11.5□□□□□ -0.57
VPS54-203ENST00000409558 CTSDP07339 412 aaPredicted RBP11.5□□□□□ -0.57
VPS54-203ENST00000409558 VAMP2P63027 116 aa11.5□□□□□ -0.57
VPS54-203ENST00000409558 ZNF818PQ6ZRF7 136 aa11.5□□□□□ -0.57
VPS54-203ENST00000409558 TM2D1Q9BX74 207 aa11.5□□□□□ -0.57
VPS54-203ENST00000409558 PCDHB16Q9NRJ7 776 aa11.5□□□□□ -0.57
VPS54-203ENST00000409558 LPAR3Q9UBY5 353 aa11.5□□□□□ -0.57
VPS54-203ENST00000409558 IAPPP10997 89 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 FABP6P51161 128 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 CLDN18P56856 261 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 GNMTQ14749 295 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 VHLLQ6RSH7 139 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 MDP1Q86V88 176 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 ZNF808Q8N4W9 903 aaPredicted RBP11.49□□□□□ -0.57
VPS54-203ENST00000409558 OR2J1Q9GZK6 312 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 UQCC1Q9NVA1 299 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 PLA2G2EQ9NZK7 142 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 FBLN5Q9UBX5 448 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 ABCA1O95477 2261 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 ANKRD30BLA7E2S9 258 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 H7C2Y5 167 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 RBMXL2O75526 392 aaKnown RBP11.49□□□□□ -0.57
VPS54-203ENST00000409558 NAT1P18440 290 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 OR1K1Q8NGR3 316 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 RFESDQ8TAC1 157 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 SYT3Q9BQG1 590 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 WFDC1Q9HC57 220 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 MMP7P09237 267 aaPredicted RBP11.49□□□□□ -0.57
VPS54-203ENST00000409558 SP9P0CG40 484 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 TDGF1P13385 188 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 SPINK9Q5DT21 86 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 IQCF2Q8IXL9 164 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 NTNG2Q96CW9 530 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 TRIB1Q96RU8 372 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 FAM234AQ9H0X4 552 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 COL6A6A6NMZ7 2263 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 C3orf85A0A1B0GTC6 90 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 TUSC2O75896 110 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 SPAG16Q8N0X2 631 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 SVBPQ8N300 66 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 DEFB124Q8NES8 71 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 OR1A1Q9P1Q5 309 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 MUC6Q6W4X9 2439 aa11.49□□□□□ -0.57
VPS54-203ENST00000409558 DPPA2Q7Z7J5 298 aa11.48□□□□□ -0.57
VPS54-203ENST00000409558 PUS1Q9Y606 427 aaKnown RBP eCLIP11.48□□□□□ -0.57
VPS54-203ENST00000409558 RELNP78509 3460 aa11.48□□□□□ -0.57
VPS54-203ENST00000409558 ARFGEF3Q5TH69 2177 aa11.48□□□□□ -0.57
VPS54-203ENST00000409558 B4E171 279 aa11.48□□□□□ -0.57
VPS54-203ENST00000409558 RNASEK-C17orf49H0YIS7 233 aa11.48□□□□□ -0.57
VPS54-203ENST00000409558 M0R296 226 aa11.48□□□□□ -0.57
VPS54-203ENST00000409558 TSPAN7P41732 249 aa11.48□□□□□ -0.57
VPS54-203ENST00000409558 HIST1H3AP68431 136 aa11.48□□□□□ -0.57
VPS54-203ENST00000409558 HAGHQ16775 308 aa11.48□□□□□ -0.57
VPS54-203ENST00000409558 HIST2H3PS2Q5TEC6 136 aa11.48□□□□□ -0.57
VPS54-203ENST00000409558 TFAP2EQ6VUC0 442 aa11.48□□□□□ -0.57
VPS54-203ENST00000409558 HIST2H3AQ71DI3 136 aa11.48□□□□□ -0.57
VPS54-203ENST00000409558 OBP2BQ9NPH6 170 aa11.48□□□□□ -0.57
VPS54-203ENST00000409558 DEFB108AA8MXU0 73 aa11.48□□□□□ -0.57
VPS54-203ENST00000409558 HMGB3O15347 200 aaKnown RBP11.48□□□□□ -0.57
VPS54-203ENST00000409558 ST8SIA3O43173 380 aa11.48□□□□□ -0.57
VPS54-203ENST00000409558 SLC34A2O95436 690 aa11.48□□□□□ -0.57
VPS54-203ENST00000409558 IGLV3-1P01715 115 aa11.48□□□□□ -0.57
VPS54-203ENST00000409558 SOX8P57073 446 aa11.48□□□□□ -0.57
VPS54-203ENST00000409558 TMEM267Q0VDI3 215 aaPredicted RBP11.48□□□□□ -0.57
VPS54-203ENST00000409558 TMEM187Q14656 261 aa11.48□□□□□ -0.57
VPS54-203ENST00000409558 LGI3Q8N145 548 aa11.48□□□□□ -0.57
VPS54-203ENST00000409558 TINAGQ9UJW2 476 aa11.48□□□□□ -0.57
VPS54-203ENST00000409558 TRAPPC2LQ9UL33 140 aa11.48□□□□□ -0.57
VPS54-203ENST00000409558 FOXI3A8MTJ6 420 aaPredicted RBP11.47□□□□□ -0.57
VPS54-203ENST00000409558 DEDDO75618 318 aa11.47□□□□□ -0.57
VPS54-203ENST00000409558 FBP1P09467 338 aa11.47□□□□□ -0.57
VPS54-203ENST00000409558 HLA-GP17693 338 aa11.47□□□□□ -0.57
VPS54-203ENST00000409558 ACP1P24666 158 aa11.47□□□□□ -0.57
VPS54-203ENST00000409558 ABLIM2Q6H8Q1 611 aa11.47□□□□□ -0.57
VPS54-203ENST00000409558 MARVELD3Q96A59 401 aa11.47□□□□□ -0.57
VPS54-203ENST00000409558 TREM2Q9NZC2 230 aa11.47□□□□□ -0.57
VPS54-203ENST00000409558 TMEM265A0A087WTH1 108 aa11.47□□□□□ -0.57
VPS54-203ENST00000409558 CDX4O14627 284 aaPredicted RBP11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms