RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 STARD10Q9Y365 291 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 LMO7DNF2Z398 122 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 H0YIZ8 118 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 DXOO77932 396 aaKnown RBP10.47□□□□□ -0.73
HMGB1-206ENST00000405805 OR5G3P0C626 314 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 USF1P22415 310 aaPredicted RBP10.47□□□□□ -0.73
HMGB1-206ENST00000405805 CTSSP25774 331 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 CD200P41217 278 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 NOVA1P51513 510 aaKnown RBP10.47□□□□□ -0.73
HMGB1-206ENST00000405805 SCAND1P57086 179 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 SLC35A1P78382 337 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 CSRP2Q16527 193 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 AAED1Q7RTV5 226 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 OR13G1Q8NGZ3 307 aa10.47□□□□□ -0.73
HMGB1-206ENST00000405805 IGHV1OR21-1A0A087WYE8 117 aa10.46□□□□□ -0.73
HMGB1-206ENST00000405805 CIDEAO60543 219 aa10.46□□□□□ -0.73
HMGB1-206ENST00000405805 FPR2P25090 351 aa10.46□□□□□ -0.73
HMGB1-206ENST00000405805 FASLGP48023 281 aa10.46□□□□□ -0.73
HMGB1-206ENST00000405805 WDR25Q64LD2 544 aaPredicted RBP10.46□□□□□ -0.73
HMGB1-206ENST00000405805 KLHDC1Q8N7A1 406 aa10.46□□□□□ -0.73
HMGB1-206ENST00000405805 ZNF611Q8N823 705 aa10.46□□□□□ -0.73
HMGB1-206ENST00000405805 OR11L1Q8NGX0 322 aa10.46□□□□□ -0.73
HMGB1-206ENST00000405805 ST8SIA1Q92185 356 aa10.46□□□□□ -0.73
HMGB1-206ENST00000405805 OR51I2Q9H344 312 aa10.46□□□□□ -0.73
HMGB1-206ENST00000405805 TRAPPC1Q9Y5R8 145 aa10.46□□□□□ -0.73
HMGB1-206ENST00000405805 TRIOO75962 3097 aa10.46□□□□□ -0.73
HMGB1-206ENST00000405805 ZNF407Q9C0G0 2248 aa10.46□□□□□ -0.73
HMGB1-206ENST00000405805 TTC28Q96AY4 2481 aa10.46□□□□□ -0.73
HMGB1-206ENST00000405805 HSPB2A8KAH6 182 aa10.46□□□□□ -0.74
HMGB1-206ENST00000405805 TNFSF11O14788 317 aa10.46□□□□□ -0.74
HMGB1-206ENST00000405805 TAAR5O14804 337 aa10.46□□□□□ -0.74
HMGB1-206ENST00000405805 TK1P04183 234 aa10.46□□□□□ -0.74
HMGB1-206ENST00000405805 CHRNA7P36544 502 aa10.46□□□□□ -0.74
HMGB1-206ENST00000405805 NKX2-1P43699 371 aaPredicted RBP10.46□□□□□ -0.74
HMGB1-206ENST00000405805 TNFSF10P50591 281 aa10.46□□□□□ -0.74
HMGB1-206ENST00000405805 TPPP2P59282 170 aa10.46□□□□□ -0.74
HMGB1-206ENST00000405805 HSPB2Q16082 182 aa10.46□□□□□ -0.74
HMGB1-206ENST00000405805 NOXO1Q8NFA2 376 aa10.46□□□□□ -0.74
HMGB1-206ENST00000405805 LIPHQ8WWY8 451 aa10.46□□□□□ -0.74
HMGB1-206ENST00000405805 STARD4Q96DR4 205 aa10.46□□□□□ -0.74
HMGB1-206ENST00000405805 RAB18Q9NP72 206 aa10.46□□□□□ -0.74
HMGB1-206ENST00000405805 LYRM2Q9NU23 88 aaPredicted RBP10.46□□□□□ -0.74
HMGB1-206ENST00000405805 MTCH2Q9Y6C9 303 aa10.46□□□□□ -0.74
HMGB1-206ENST00000405805 A0A1B0GWJ7 208 aa10.46□□□□□ -0.74
HMGB1-206ENST00000405805 ZNF814B7Z6K7 855 aa10.46□□□□□ -0.74
HMGB1-206ENST00000405805 CST4P01036 141 aa10.46□□□□□ -0.74
HMGB1-206ENST00000405805 CELA2AP08217 269 aa10.46□□□□□ -0.74
HMGB1-206ENST00000405805 METTL15P1P0C7V9 234 aa10.46□□□□□ -0.74
HMGB1-206ENST00000405805 TNFSF4P23510 183 aa10.46□□□□□ -0.74
HMGB1-206ENST00000405805 OR10J1P30954 320 aa10.46□□□□□ -0.74
HMGB1-206ENST00000405805 MYPOPQ86VE0 399 aaPredicted RBP10.46□□□□□ -0.74
HMGB1-206ENST00000405805 SAT2Q96F10 170 aaPredicted RBP10.46□□□□□ -0.74
HMGB1-206ENST00000405805 H0YL77 283 aa10.45□□□□□ -0.74
HMGB1-206ENST00000405805 ROM1Q03395 351 aa10.45□□□□□ -0.74
HMGB1-206ENST00000405805 LTC4SQ16873 150 aa10.45□□□□□ -0.74
HMGB1-206ENST00000405805 MPV17LQ2QL34 196 aa10.45□□□□□ -0.74
HMGB1-206ENST00000405805 ZNF774Q6NX45 483 aa10.45□□□□□ -0.74
HMGB1-206ENST00000405805 ZNF813Q6ZN06 617 aa10.45□□□□□ -0.74
HMGB1-206ENST00000405805 CCDC71LQ8N9Z2 235 aa10.45□□□□□ -0.74
HMGB1-206ENST00000405805 NECAP2Q9NVZ3 263 aa10.45□□□□□ -0.74
HMGB1-206ENST00000405805 ALPK3Q96L96 1907 aa10.45□□□□□ -0.74
HMGB1-206ENST00000405805 FTCDNL1E5RQL4 147 aa10.45□□□□□ -0.74
HMGB1-206ENST00000405805 P04436 131 aa10.45□□□□□ -0.74
HMGB1-206ENST00000405805 SLC25A4P12235 298 aa10.45□□□□□ -0.74
HMGB1-206ENST00000405805 LDLRAD2Q5SZI1 272 aa10.45□□□□□ -0.74
HMGB1-206ENST00000405805 BTNL3Q6UXE8 466 aa10.45□□□□□ -0.74
HMGB1-206ENST00000405805 LGI3Q8N145 548 aa10.45□□□□□ -0.74
HMGB1-206ENST00000405805 OR10A7Q8NGE5 316 aa10.45□□□□□ -0.74
HMGB1-206ENST00000405805 MFRPQ9BY79 579 aa10.45□□□□□ -0.74
HMGB1-206ENST00000405805 TRAV39A0A0B4J263 110 aa10.45□□□□□ -0.74
HMGB1-206ENST00000405805 LIPT2A6NK58 231 aa10.45□□□□□ -0.74
HMGB1-206ENST00000405805 COLCA2A8K830 154 aa10.45□□□□□ -0.74
HMGB1-206ENST00000405805 CD81P60033 236 aa10.45□□□□□ -0.74
HMGB1-206ENST00000405805 PIGYQ3MUY2 71 aa10.45□□□□□ -0.74
HMGB1-206ENST00000405805 ZNF385AQ96PM9 386 aaKnown RBP10.45□□□□□ -0.74
HMGB1-206ENST00000405805 ABCA1O95477 2261 aa10.45□□□□□ -0.74
HMGB1-206ENST00000405805 MDFIC2A0A1B0GVS7 189 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 LNP1A1A4G5 178 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 CXCL13O43927 109 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 UCP3P55916 312 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 HLA-DRB3P79483 266 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 MRPL21Q7Z2W9 205 aaKnown RBP10.44□□□□□ -0.74
HMGB1-206ENST00000405805 ZNF519Q8TB69 540 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 EDARADDQ8WWZ3 215 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 AQP3Q92482 292 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 PECRQ9BY49 303 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 P4HTMQ9NXG6 502 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 PRRC2CQ9Y520 2896 aaKnown RBP10.44□□□□□ -0.74
HMGB1-206ENST00000405805 DHHO43323 396 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 PIAS2O75928 621 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 IAPPP10997 89 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 GRB2P62993 217 aaKnown RBP10.44□□□□□ -0.74
HMGB1-206ENST00000405805 ZNF266Q14584 549 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 ZNF345Q14585 488 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 GPR132Q9UNW8 380 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 SZT2Q5T011 3432 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 ZNF735P0CB33 412 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 TBPP20226 339 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 AMTP48728 403 aa10.44□□□□□ -0.74
HMGB1-206ENST00000405805 PLGLB1Q02325 96 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 115.1 ms