RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 WIPI2Q9Y4P8 454 aa3.12□□□□□ -1.91
RTN4-208ENST00000404909 VPS13CQ709C8 3753 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 IGKV1D-17A0A075B6S4 117 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 DISC1C4P0D8 188 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 ARPC1BO15143 372 aaKnown RBP3.11□□□□□ -1.91
RTN4-208ENST00000404909 PFDN1O60925 122 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 KNG1P01042 644 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 GYPAP02724 150 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 ACAA1P09110 424 aaPredicted RBP3.11□□□□□ -1.91
RTN4-208ENST00000404909 IGFBP2P18065 325 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 RCC1P18754 421 aaPredicted RBP3.11□□□□□ -1.91
RTN4-208ENST00000404909 AESQ08117 197 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 MEF2DQ14814 521 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 C20orf204Q6ZNR8 217 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 ZNRF1Q8ND25 227 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 DUSP18Q8NEJ0 188 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 UBALD1Q8TB05 177 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 HPS1Q92902 700 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 ERGIC1Q969X5 290 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 TMPRSS13Q9BYE2 586 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 C20orf85Q9H1P6 137 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 TMEM165Q9HC07 324 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 CBLN4Q9NTU7 201 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 RASL12Q9NYN1 266 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 ANXA10Q9UJ72 324 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 SCP2D1Q9UJQ7 156 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 TRAPPC2LQ9UL33 140 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 SVEP1Q4LDE5 3571 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 IGHV1-69-2A0A0G2JMI3 117 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 BET1O15155 118 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 LHBP01229 141 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 CD74P04233 296 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 CD55P08174 381 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 ADH4P08319 380 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 H2AFB2P0C5Z0 115 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 GSTT2P0CG29 244 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 SELLP14151 372 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 DTYMKP23919 212 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 CFHR2P36980 270 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 CDKN1AP38936 164 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 TAS2R46P59540 309 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 SEC61A1P61619 476 aaKnown RBP3.11□□□□□ -1.91
RTN4-208ENST00000404909 SRSF1Q07955 248 aaKnown RBP eCLIP3.11□□□□□ -1.914e-8■■□□□ 12.3
RTN4-208ENST00000404909 RBMS2Q15434 407 aaKnown RBP3.11□□□□□ -1.91
RTN4-208ENST00000404909 GRK1Q15835 563 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 TATDN3Q17R31 274 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 HFEQ30201 348 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 Q6ZPA2 131 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 TMED4Q7Z7H5 227 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 FAM90A1Q86YD7 464 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 OR5AP2Q8NGF4 316 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 PLPPR1Q8TBJ4 325 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 IL1F10Q8WWZ1 152 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 CREB3L1Q96BA8 519 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 POM121Q96HA1 1249 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 CCL13Q99616 98 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 ZNF286AQ9HBT8 521 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 TMEM106BQ9NUM4 274 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 COPZ2Q9P299 210 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 EDARQ9UNE0 448 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 NUBP2Q9Y5Y2 271 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 DSCAMO60469 2012 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 NBPF19A0A087WUL8 3843 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 NOTCH2Q04721 2471 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 CSMD1Q96PZ7 3565 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 MEIKINA0A087WXM9 373 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 A0A1B0GW55 424 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 TMEM82A0PJX8 343 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 FUOMA2VDF0 154 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 OOEPA6NGQ2 149 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 TMPRSS2O15393 492 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 CA11O75493 328 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 NAPSAO96009 420 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 CD8AP01732 235 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 DUX4L2P0CJ85 424 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 DUX4L3P0CJ86 424 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 DUX4L4P0CJ87 422 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 DUX4L5P0CJ88 424 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 DUX4L6P0CJ89 424 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 DUX4L7P0CJ90 424 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 OR5H8P0DN80 308 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 ANXA7P20073 488 aaKnown RBP3.11□□□□□ -1.91
RTN4-208ENST00000404909 COL8A2P25067 703 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 NPY4RP50391 375 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 EDDM3BP56851 147 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 BAMBIQ13145 260 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 CBX3Q13185 183 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 IGSF11Q5DX21 431 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 KRBOX4Q5JUW0 171 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 DUX4L9Q6RFH8 374 aaPredicted RBP3.11□□□□□ -1.91
RTN4-208ENST00000404909 C17orf107Q6ZR85 190 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 C1orf87Q8N0U7 546 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 CADM3Q8N126 398 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 DRAXINQ8NBI3 349 aaPredicted RBP3.11□□□□□ -1.91
RTN4-208ENST00000404909 TMEM185AQ8NFB2 350 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 MRPL30Q8TCC3 161 aaKnown RBP3.11□□□□□ -1.91
RTN4-208ENST00000404909 Q8TCH9 128 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 PRRT1Q99946 306 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 MARVELD1Q9BSK0 173 aa3.11□□□□□ -1.91
RTN4-208ENST00000404909 RAB1BQ9H0U4 201 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms