RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 KMT2EQ8IZD2 1858 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 H3BRM9 83 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 MOSPD3O75425 235 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 SCG5P05408 212 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 LAMP1P11279 417 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 MUC1P15941 1255 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-202ENST00000375405 CTLA4P16410 223 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 LINC00158P58513 81 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 CLDN10P78369 228 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 MEF2CQ06413 473 aaPredicted RBP4.14□□□□□ -1.75
SCN1A-202ENST00000375405 RAB40BQ12829 278 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 LYPD4Q6UWN0 246 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 SLC16A13Q7RTY0 426 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 NKAPP1Q8N9T2 125 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 SMRP1Q8NCR6 262 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 PDLIM7Q9NR12 457 aa4.14□□□□□ -1.75
SCN1A-202ENST00000375405 GMPR2Q9P2T1 348 aaKnown RBP4.14□□□□□ -1.75
SCN1A-202ENST00000375405 DIP2AQ14689 1571 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 C11orf97A0A1B0GVM6 126 aaPredicted RBP4.13□□□□□ -1.75
SCN1A-202ENST00000375405 CHD1O14646 1710 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 TFAP2AP05549 437 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 FUT6P51993 359 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 NPC2P61916 151 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 CX3CL1P78423 397 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 ADAMTS17Q8TE56 1095 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 TMEM186Q96B77 213 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 MS4A6AQ9H2W1 248 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 PRO1933Q9H354 126 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 OARD1Q9Y530 152 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 hCG_38984A0A1B0GV85 526 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 FRG2CA6NGY1 282 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 E5RGE8 158 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 LRP3O75074 770 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 TOMM40O96008 361 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 CR2P20023 1033 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 FUT3P21217 361 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 GLRXP35754 106 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 CTSCP53634 463 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 ZNF678Q5SXM1 525 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 MRPL2Q5T653 305 aaKnown RBP4.13□□□□□ -1.75
SCN1A-202ENST00000375405 MRGPRGQ86SM5 289 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 TMEM86BQ8N661 226 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 ZNF384Q8TF68 577 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 SLC45A3Q96JT2 553 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 CHST5Q9GZS9 411 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 UBE2ZQ9H832 354 aaPredicted RBP4.13□□□□□ -1.75
SCN1A-202ENST00000375405 METTL1Q9UBP6 276 aaKnown RBP4.13□□□□□ -1.75
SCN1A-202ENST00000375405 ZNFX1Q9P2E3 1918 aaKnown RBP4.13□□□□□ -1.75
SCN1A-202ENST00000375405 TRAV25A0A0B4J276 109 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 HRO43593 1189 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 HCRTR1O43613 425 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 EIF3GO75821 320 aaKnown RBP eCLIP4.13□□□□□ -1.75
SCN1A-202ENST00000375405 LALBAP00709 142 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 SMAD4Q13485 552 aaKnown RBP4.13□□□□□ -1.75
SCN1A-202ENST00000375405 TMEM136Q6ZRR5 245 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 C8orf31Q8N9H6 132 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 AKR7LQ8NHP1 331 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 TNFRSF14Q92956 283 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 SH3BGRL3Q9H299 93 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 SH2D2AQ9NP31 389 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 IL37Q9NZH6 218 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 CACFD1Q9UGQ2 172 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 ZMIZ1Q9ULJ6 1067 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 DAPP1Q9UN19 280 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 ENTPD2Q9Y5L3 495 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 PRR14LQ5THK1 2151 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 IGHV3-66A0A0C4DH42 116 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 C2CD4BA6NLJ0 364 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 C1QTNF9BB2RNN3 333 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 TSPAN2O60636 221 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 CST7O76096 145 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 UBL3O95164 117 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 OSMP13725 252 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 CRYBB2P43320 205 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 WNT4P56705 351 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 TSPAN31Q12999 210 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 TCTEX1D4Q5JR98 221 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 ZNF506Q5JVG8 444 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 PCSK4Q6UW60 755 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 GLDNQ6ZMI3 551 aaPredicted RBP4.13□□□□□ -1.75
SCN1A-202ENST00000375405 C4orf32Q8N8J7 132 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 ZNF778Q96MU6 729 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 OR2A14Q96R47 310 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 CITED1Q99966 193 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 HNRNPA1P09651 372 aaKnown RBP eCLIP4.13□□□□□ -1.75
SCN1A-202ENST00000375405 B4GALT1P15291 398 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 ARRB2P32121 409 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 KIR2DS3Q14952 304 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 SHBQ15464 509 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 TECRLQ5HYJ1 363 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 FOXB2Q5VYV0 432 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 FAM71F2Q6NXP2 309 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 SLC25A26Q70HW3 274 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 TMEM25Q86YD3 366 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 OR1L6Q8NGR2 347 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 NUBPLQ8TB37 319 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 GNPNAT1Q96EK6 184 aaPredicted RBP4.13□□□□□ -1.75
SCN1A-202ENST00000375405 NTN4Q9HB63 628 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 GLTPD2A6NH11 291 aa4.13□□□□□ -1.75
SCN1A-202ENST00000375405 ZNF623O75123 536 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms