RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 OCEL1Q9H607 264 aa12.38□□□□□ -0.43
SMPDL3A-201ENST00000368440 PEX16Q9Y5Y5 336 aa12.38□□□□□ -0.43
SMPDL3A-201ENST00000368440 A0A0B4J203 849 aa12.37□□□□□ -0.43
SMPDL3A-201ENST00000368440 TRAV1-2A0A0B4J238 106 aa12.37□□□□□ -0.43
SMPDL3A-201ENST00000368440 TRAV24A0A0B4J272 114 aa12.37□□□□□ -0.43
SMPDL3A-201ENST00000368440 HSPB6O14558 160 aa12.37□□□□□ -0.43
SMPDL3A-201ENST00000368440 GEMIN2O14893 280 aaKnown RBP12.37□□□□□ -0.43
SMPDL3A-201ENST00000368440 IFNA2P01563 188 aa12.37□□□□□ -0.43
SMPDL3A-201ENST00000368440 C1orf100Q5SVJ3 147 aa12.37□□□□□ -0.43
SMPDL3A-201ENST00000368440 SFXN4Q6P4A7 337 aa12.37□□□□□ -0.43
SMPDL3A-201ENST00000368440 TPRA1Q86W33 373 aa12.37□□□□□ -0.43
SMPDL3A-201ENST00000368440 C11orf42Q8N5U0 333 aa12.37□□□□□ -0.43
SMPDL3A-201ENST00000368440 TMEM104Q8NE00 496 aa12.37□□□□□ -0.43
SMPDL3A-201ENST00000368440 OR5D13Q8NGL4 314 aa12.37□□□□□ -0.43
SMPDL3A-201ENST00000368440 AP3S1Q92572 193 aa12.37□□□□□ -0.43
SMPDL3A-201ENST00000368440 SLITRK2Q9H156 845 aa12.37□□□□□ -0.43
SMPDL3A-201ENST00000368440 BANF2Q9H503 90 aa12.37□□□□□ -0.43
SMPDL3A-201ENST00000368440 AKIP1Q9NQ31 210 aa12.37□□□□□ -0.43
SMPDL3A-201ENST00000368440 A3GALT2U3KPV4 340 aa12.37□□□□□ -0.43
SMPDL3A-201ENST00000368440 A0A075B6Q4 140 aa12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 M0R1W7 72 aa12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 MGST3O14880 152 aa12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 CD37P11049 281 aa12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 ATXN7L3Q14CW9 347 aaPredicted RBP12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 NHLRC3Q5JS37 347 aa12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 GLT8D1Q68CQ7 371 aa12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 CMTM4Q8IZR5 234 aa12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 CHST4Q8NCG5 386 aa12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 ZFAND2BQ8WV99 257 aa12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 TNFRSF14Q92956 283 aa12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 CYYR1Q96J86 154 aa12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 ZNF48Q96MX3 618 aaPredicted RBP12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 ING3Q9NXR8 418 aa12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 RNASEK-C17orf49H0YIS7 233 aa12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 HPGDSO60760 199 aa12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 ZNF780AO75290 641 aaPredicted RBP12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 PAHP00439 452 aa12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 TNFSF8P32971 234 aa12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 GLIPR1P48060 266 aa12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 DLX6P56179 175 aa12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 AESQ08117 197 aa12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 ZNF846Q147U1 533 aa12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 HES5Q5TA89 166 aa12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 GPR157Q5UAW9 335 aa12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 OR10K2Q6IF99 312 aa12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 SNX29P2Q8IUI4 249 aa12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 MFSD4AQ8N468 514 aa12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 BPIFB2Q8N4F0 458 aa12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 PPP1R35Q8TAP8 253 aa12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 FAM46BQ96A09 425 aa12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 COQ2Q96H96 371 aa12.36□□□□□ -0.43
SMPDL3A-201ENST00000368440 FBN1P35555 2871 aaKnown RBP12.35□□□□□ -0.43
SMPDL3A-201ENST00000368440 MDFIC2A0A1B0GVS7 189 aa12.35□□□□□ -0.43
SMPDL3A-201ENST00000368440 CRTAPO75718 401 aaPredicted RBP12.35□□□□□ -0.43
SMPDL3A-201ENST00000368440 GTF2F2P13984 249 aa12.35□□□□□ -0.43
SMPDL3A-201ENST00000368440 MGMTP16455 207 aa12.35□□□□□ -0.43
SMPDL3A-201ENST00000368440 P2RX3P56373 397 aa12.35□□□□□ -0.43
SMPDL3A-201ENST00000368440 DCTN2Q13561 401 aaKnown RBP12.35□□□□□ -0.43
SMPDL3A-201ENST00000368440 TAF9Q16594 264 aa12.35□□□□□ -0.43
SMPDL3A-201ENST00000368440 TUSC1Q2TAM9 212 aa12.35□□□□□ -0.43
SMPDL3A-201ENST00000368440 PAN3Q58A45 887 aaKnown RBP12.35□□□□□ -0.43
SMPDL3A-201ENST00000368440 C16orf87Q6PH81 154 aa12.35□□□□□ -0.43
SMPDL3A-201ENST00000368440 S100ZQ8WXG8 99 aa12.35□□□□□ -0.43
SMPDL3A-201ENST00000368440 SLC25A28Q96A46 364 aa12.35□□□□□ -0.43
SMPDL3A-201ENST00000368440 FOXRED1Q96CU9 486 aaPredicted RBP12.35□□□□□ -0.43
SMPDL3A-201ENST00000368440 MS4A7Q9GZW8 240 aaPredicted RBP12.35□□□□□ -0.43
SMPDL3A-201ENST00000368440 MIXL1Q9H2W2 232 aa12.35□□□□□ -0.43
SMPDL3A-201ENST00000368440 PLGRKTQ9HBL7 147 aa12.35□□□□□ -0.43
SMPDL3A-201ENST00000368440 IGHV1-69DA0A0B4J2H0 117 aa12.34□□□□□ -0.43
SMPDL3A-201ENST00000368440 A0A1W2PRD5 423 aa12.34□□□□□ -0.43
SMPDL3A-201ENST00000368440 A0A1W2PRF3 423 aa12.34□□□□□ -0.43
SMPDL3A-201ENST00000368440 A0A1W2PRM7 423 aa12.34□□□□□ -0.43
SMPDL3A-201ENST00000368440 NOTOA8MTQ0 251 aa12.34□□□□□ -0.43
SMPDL3A-201ENST00000368440 PDCD5O14737 125 aa12.34□□□□□ -0.43
SMPDL3A-201ENST00000368440 OR7C1O76099 320 aaPredicted RBP12.34□□□□□ -0.43
SMPDL3A-201ENST00000368440 IGHV1-69P01742 117 aa12.34□□□□□ -0.43
SMPDL3A-201ENST00000368440 SNRPBP14678 240 aaKnown RBP12.34□□□□□ -0.43
SMPDL3A-201ENST00000368440 HTR2CP28335 458 aa12.34□□□□□ -0.43
SMPDL3A-201ENST00000368440 ERP29P30040 261 aaKnown RBP12.34□□□□□ -0.43
SMPDL3A-201ENST00000368440 CLDN12P56749 244 aa12.34□□□□□ -0.43
SMPDL3A-201ENST00000368440 GPR176Q14439 515 aa12.34□□□□□ -0.43
SMPDL3A-201ENST00000368440 HCP5Q6MZN7 132 aa12.34□□□□□ -0.43
SMPDL3A-201ENST00000368440 C1orf122Q6ZSJ8 110 aa12.34□□□□□ -0.43
SMPDL3A-201ENST00000368440 PNKDQ8N490 385 aa12.34□□□□□ -0.43
SMPDL3A-201ENST00000368440 DTX3Q8N9I9 347 aa12.34□□□□□ -0.43
SMPDL3A-201ENST00000368440 SUMF2Q8NBJ7 301 aa12.34□□□□□ -0.43
SMPDL3A-201ENST00000368440 PLPPR1Q8TBJ4 325 aa12.34□□□□□ -0.43
SMPDL3A-201ENST00000368440 WDR12Q9GZL7 423 aaKnown RBP12.34□□□□□ -0.43
SMPDL3A-201ENST00000368440 METTL8Q9H825 291 aaKnown RBP12.34□□□□□ -0.43
SMPDL3A-201ENST00000368440 VENTXO95231 258 aa12.34□□□□□ -0.43
SMPDL3A-201ENST00000368440 CSN2P05814 226 aa12.34□□□□□ -0.43
SMPDL3A-201ENST00000368440 VSIG8P0DPA2 414 aa12.34□□□□□ -0.43
SMPDL3A-201ENST00000368440 PRTN3P24158 256 aa12.34□□□□□ -0.43
SMPDL3A-201ENST00000368440 FPR2P25090 351 aa12.34□□□□□ -0.43
SMPDL3A-201ENST00000368440 MEF2CQ06413 473 aaPredicted RBP12.34□□□□□ -0.43
SMPDL3A-201ENST00000368440 SCGB2A2Q13296 93 aa12.34□□□□□ -0.43
SMPDL3A-201ENST00000368440 DYNC1I2Q13409 638 aaKnown RBP12.34□□□□□ -0.43
SMPDL3A-201ENST00000368440 P2RY14Q15391 338 aa12.34□□□□□ -0.43
SMPDL3A-201ENST00000368440 SPANXN2Q5MJ10 180 aa12.34□□□□□ -0.43
SMPDL3A-201ENST00000368440 MZT2AQ6P582 158 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 102.5 ms