RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 FAM27D1Q5T7N8 215 aa10.85□□□□□ -0.67
VPS29-201ENST00000360579 SBSPONQ8IVN8 264 aa10.85□□□□□ -0.67
VPS29-201ENST00000360579 C4orf3Q8WVX3 66 aa10.85□□□□□ -0.67
VPS29-201ENST00000360579 SPSB1Q96BD6 273 aa10.85□□□□□ -0.67
VPS29-201ENST00000360579 COQ2Q96H96 371 aa10.85□□□□□ -0.67
VPS29-201ENST00000360579 FAM107BQ9H098 131 aa10.85□□□□□ -0.67
VPS29-201ENST00000360579 LIN7CQ9NUP9 197 aaKnown RBP10.85□□□□□ -0.67
VPS29-201ENST00000360579 NCBP2LA6PVI3 153 aaKnown RBP10.84□□□□□ -0.67
VPS29-201ENST00000360579 H3BSH0 61 aa10.84□□□□□ -0.67
VPS29-201ENST00000360579 OCM2P0CE71 109 aa10.84□□□□□ -0.67
VPS29-201ENST00000360579 OCMP0CE72 109 aaPredicted RBP10.84□□□□□ -0.67
VPS29-201ENST00000360579 UBCP0CG48 685 aaKnown RBP10.84□□□□□ -0.67
VPS29-201ENST00000360579 C21orf33P30042 268 aaPredicted RBP10.84□□□□□ -0.67
VPS29-201ENST00000360579 CRISP1P54107 249 aa10.84□□□□□ -0.67
VPS29-201ENST00000360579 SCN1BQ07699 218 aa10.84□□□□□ -0.67
VPS29-201ENST00000360579 EBI3Q14213 229 aa10.84□□□□□ -0.67
VPS29-201ENST00000360579 LCE2CQ5TA81 110 aa10.84□□□□□ -0.67
VPS29-201ENST00000360579 NXNL2Q5VZ03 156 aa10.84□□□□□ -0.67
VPS29-201ENST00000360579 SLC16A12Q6ZSM3 486 aa10.84□□□□□ -0.67
VPS29-201ENST00000360579 UTS2BQ765I0 119 aa10.84□□□□□ -0.67
VPS29-201ENST00000360579 CITED4Q96RK1 184 aa10.84□□□□□ -0.67
VPS29-201ENST00000360579 ABCG5Q9H222 651 aa10.84□□□□□ -0.67
VPS29-201ENST00000360579 CHCHD3Q9NX63 227 aaKnown RBP10.84□□□□□ -0.67
VPS29-201ENST00000360579 ING3Q9NXR8 418 aa10.84□□□□□ -0.67
VPS29-201ENST00000360579 LOC107986453A0A1B0GWG9 222 aa10.83□□□□□ -0.68
VPS29-201ENST00000360579 METTL15A6NJ78 407 aa10.83□□□□□ -0.68
VPS29-201ENST00000360579 LINC01548A6NM66 108 aa10.83□□□□□ -0.68
VPS29-201ENST00000360579 SLC33A1O00400 549 aaPredicted RBP10.83□□□□□ -0.68
VPS29-201ENST00000360579 PRKYO43930 277 aa10.83□□□□□ -0.68
VPS29-201ENST00000360579 MPZL2O60487 215 aa10.83□□□□□ -0.68
VPS29-201ENST00000360579 SULT1C4O75897 302 aa10.83□□□□□ -0.68
VPS29-201ENST00000360579 KDM4BO94953 1096 aa10.83□□□□□ -0.68
VPS29-201ENST00000360579 IL1AP01583 271 aa10.83□□□□□ -0.68
VPS29-201ENST00000360579 OR8U8P0C7N1 319 aa10.83□□□□□ -0.68
VPS29-201ENST00000360579 ATF1P18846 271 aa10.83□□□□□ -0.68
VPS29-201ENST00000360579 VDAC1P21796 283 aa10.83□□□□□ -0.68
VPS29-201ENST00000360579 GLP1RP43220 463 aa10.83□□□□□ -0.68
VPS29-201ENST00000360579 MS4A2Q01362 244 aa10.83□□□□□ -0.68
VPS29-201ENST00000360579 ATXN7L3Q14CW9 347 aaPredicted RBP10.83□□□□□ -0.68
VPS29-201ENST00000360579 UTF1Q5T230 341 aa10.83□□□□□ -0.68
VPS29-201ENST00000360579 ZNF429Q86V71 674 aa10.83□□□□□ -0.68
VPS29-201ENST00000360579 GID4Q8IVV7 300 aa10.83□□□□□ -0.68
VPS29-201ENST00000360579 HS3ST5Q8IZT8 346 aa10.83□□□□□ -0.68
VPS29-201ENST00000360579 OR11H1Q8NG94 326 aa10.83□□□□□ -0.68
VPS29-201ENST00000360579 OR10X1Q8NGY0 326 aa10.83□□□□□ -0.68
VPS29-201ENST00000360579 ASB9Q96DX5 294 aa10.83□□□□□ -0.68
VPS29-201ENST00000360579 OPALINQ96PE5 141 aa10.83□□□□□ -0.68
VPS29-201ENST00000360579 NCOR1P1Q9H4R4 102 aa10.83□□□□□ -0.68
VPS29-201ENST00000360579 LINC00574Q9H8X3 128 aa10.83□□□□□ -0.68
VPS29-201ENST00000360579 CALYQ9NYX4 217 aa10.83□□□□□ -0.68
VPS29-201ENST00000360579 IDI2-AS1Q9NZ38 188 aa10.83□□□□□ -0.68
VPS29-201ENST00000360579 PSG11Q9UQ72 335 aa10.83□□□□□ -0.68
VPS29-201ENST00000360579 IGKV1-9A0A0C4DH69 117 aa10.82□□□□□ -0.68
VPS29-201ENST00000360579 DEGS1O15121 323 aa10.82□□□□□ -0.68
VPS29-201ENST00000360579 DCTN3O75935 186 aa10.82□□□□□ -0.68
VPS29-201ENST00000360579 IGHG4P01861 327 aa10.82□□□□□ -0.68
VPS29-201ENST00000360579 OR5H8P0DN80 308 aa10.82□□□□□ -0.68
VPS29-201ENST00000360579 CGB3P0DN86 165 aa10.82□□□□□ -0.68
VPS29-201ENST00000360579 CGB7P0DN87 165 aa10.82□□□□□ -0.68
VPS29-201ENST00000360579 PRKACGP22612 351 aa10.82□□□□□ -0.68
VPS29-201ENST00000360579 ZNF816Q0VGE8 651 aaPredicted RBP10.82□□□□□ -0.68
VPS29-201ENST00000360579 DIAPH2-AS1Q14236 149 aa10.82□□□□□ -0.68
VPS29-201ENST00000360579 PTGES3Q15185 160 aaKnown RBP10.82□□□□□ -0.68
VPS29-201ENST00000360579 AADACL4Q5VUY2 407 aa10.82□□□□□ -0.68
VPS29-201ENST00000360579 Q6P435 159 aa10.82□□□□□ -0.68
VPS29-201ENST00000360579 IZUMO1Q8IYV9 350 aa10.82□□□□□ -0.68
VPS29-201ENST00000360579 SAXO1Q8IYX7 474 aa10.82□□□□□ -0.68
VPS29-201ENST00000360579 ADGRG5Q8IZF4 528 aa10.82□□□□□ -0.68
VPS29-201ENST00000360579 OR10A7Q8NGE5 316 aa10.82□□□□□ -0.68
VPS29-201ENST00000360579 OR51T1Q8NGJ9 327 aa10.82□□□□□ -0.68
VPS29-201ENST00000360579 OR2T10Q8NGZ9 312 aa10.82□□□□□ -0.68
VPS29-201ENST00000360579 EAF1Q96JC9 268 aaPredicted RBP10.82□□□□□ -0.68
VPS29-201ENST00000360579 PPIL3Q9H2H8 161 aaKnown RBP10.82□□□□□ -0.68
VPS29-201ENST00000360579 NEK6Q9HC98 313 aa10.82□□□□□ -0.68
VPS29-201ENST00000360579 MED4Q9NPJ6 270 aa10.82□□□□□ -0.68
VPS29-201ENST00000360579 GAR1Q9NY12 217 aaKnown RBP10.82□□□□□ -0.68
VPS29-201ENST00000360579 NKX1-2Q9UD57 310 aaPredicted RBP10.82□□□□□ -0.68
VPS29-201ENST00000360579 KIAA2026Q5HYC2 2103 aa10.82□□□□□ -0.68
VPS29-201ENST00000360579 MEIKINA0A087WXM9 373 aa10.81□□□□□ -0.68
VPS29-201ENST00000360579 IGKV1-12A0A0C4DH73 117 aa10.81□□□□□ -0.68
VPS29-201ENST00000360579 B2RBV5 119 aa10.81□□□□□ -0.68
VPS29-201ENST00000360579 HSD17B6O14756 317 aa10.81□□□□□ -0.68
VPS29-201ENST00000360579 FAM107AO95990 144 aa10.81□□□□□ -0.68
VPS29-201ENST00000360579 IGKV1D-12P01611 117 aa10.81□□□□□ -0.68
VPS29-201ENST00000360579 GAPDHP04406 335 aaKnown RBP10.81□□□□□ -0.68
VPS29-201ENST00000360579 OR2T7P0C7T2 308 aa10.81□□□□□ -0.68
VPS29-201ENST00000360579 FRMD6-AS1P0C7T7 363 aa10.81□□□□□ -0.68
VPS29-201ENST00000360579 ZNF20P17024 532 aa10.81□□□□□ -0.68
VPS29-201ENST00000360579 TMEM244Q5VVB8 128 aa10.81□□□□□ -0.68
VPS29-201ENST00000360579 SSX6Q7RTT6 188 aa10.81□□□□□ -0.68
VPS29-201ENST00000360579 BCDIN3DQ7Z5W3 292 aaKnown RBP10.81□□□□□ -0.68
VPS29-201ENST00000360579 MOB3BQ86TA1 216 aa10.81□□□□□ -0.68
VPS29-201ENST00000360579 OR8H1Q8NGG4 311 aa10.81□□□□□ -0.68
VPS29-201ENST00000360579 TMEM163Q8TC26 289 aa10.81□□□□□ -0.68
VPS29-201ENST00000360579 LEAP2Q969E1 77 aa10.81□□□□□ -0.68
VPS29-201ENST00000360579 RNFT2Q96EX2 444 aa10.81□□□□□ -0.68
VPS29-201ENST00000360579 ADAT3Q96EY9 351 aaPredicted RBP10.81□□□□□ -0.68
VPS29-201ENST00000360579 RASL11BQ9BPW5 248 aa10.81□□□□□ -0.68
VPS29-201ENST00000360579 OSBPL10Q9BXB5 764 aa10.81□□□□□ -0.68
VPS29-201ENST00000360579 BARHL1Q9BZE3 327 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms