RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 CPEB3Q8NE35 698 aaKnown RBP10.46□□□□□ -0.74
CLIP3-201ENST00000360535 OR1J1Q8NGS3 322 aa10.46□□□□□ -0.74
CLIP3-201ENST00000360535 SAP25Q8TEE9 199 aa10.46□□□□□ -0.74
CLIP3-201ENST00000360535 GALNT14Q96FL9 552 aa10.46□□□□□ -0.74
CLIP3-201ENST00000360535 BOD1Q96IK1 185 aa10.46□□□□□ -0.74
CLIP3-201ENST00000360535 IMMP1LQ96LU5 166 aa10.46□□□□□ -0.74
CLIP3-201ENST00000360535 PCED1AQ9H1Q7 454 aa10.46□□□□□ -0.74
CLIP3-201ENST00000360535 MIOXQ9UGB7 285 aa10.46□□□□□ -0.74
CLIP3-201ENST00000360535 HSF4Q9ULV5 492 aa10.46□□□□□ -0.74
CLIP3-201ENST00000360535 CLDN15P56746 228 aa10.45□□□□□ -0.74
CLIP3-201ENST00000360535 UBE2KP61086 200 aa10.45□□□□□ -0.74
CLIP3-201ENST00000360535 HIST1H3AP68431 136 aa10.45□□□□□ -0.74
CLIP3-201ENST00000360535 IL13RA2Q14627 380 aa10.45□□□□□ -0.74
CLIP3-201ENST00000360535 HMGN3Q15651 99 aa10.45□□□□□ -0.74
CLIP3-201ENST00000360535 HIST2H3PS2Q5TEC6 136 aa10.45□□□□□ -0.74
CLIP3-201ENST00000360535 HIST2H3AQ71DI3 136 aa10.45□□□□□ -0.74
CLIP3-201ENST00000360535 CPNE4Q96A23 557 aaPredicted RBP10.45□□□□□ -0.74
CLIP3-201ENST00000360535 SMOC1Q9H4F8 434 aa10.45□□□□□ -0.74
CLIP3-201ENST00000360535 RBM7Q9Y580 266 aaKnown RBP10.45□□□□□ -0.74
CLIP3-201ENST00000360535 POMT1Q9Y6A1 747 aa10.45□□□□□ -0.74
CLIP3-201ENST00000360535 CHST1O43916 411 aa10.45□□□□□ -0.74
CLIP3-201ENST00000360535 FOLR3P41439 243 aa10.45□□□□□ -0.74
CLIP3-201ENST00000360535 TMEM267Q0VDI3 215 aaPredicted RBP10.45□□□□□ -0.74
CLIP3-201ENST00000360535 TDHQ8IZJ6 230 aa10.45□□□□□ -0.74
CLIP3-201ENST00000360535 GTF3C1Q12789 2109 aa10.45□□□□□ -0.74
CLIP3-201ENST00000360535 ZNF816-ZNF321PA0A0X1KG74 233 aa10.45□□□□□ -0.74
CLIP3-201ENST00000360535 RBFOX3A6NFN3 312 aa10.45□□□□□ -0.74
CLIP3-201ENST00000360535 S100A12P80511 92 aa10.45□□□□□ -0.74
CLIP3-201ENST00000360535 KIAA0141Q14154 515 aaPredicted RBP10.45□□□□□ -0.74
CLIP3-201ENST00000360535 SPINK14Q6IE38 97 aa10.45□□□□□ -0.74
CLIP3-201ENST00000360535 TMEM252Q8N6L7 170 aa10.45□□□□□ -0.74
CLIP3-201ENST00000360535 AGBL5Q8NDL9 886 aa10.45□□□□□ -0.74
CLIP3-201ENST00000360535 HPSE2Q8WWQ2 592 aa10.45□□□□□ -0.74
CLIP3-201ENST00000360535 GSN-AS1Q9NRJ2 163 aa10.45□□□□□ -0.74
CLIP3-201ENST00000360535 GLRX2Q9NS18 164 aa10.45□□□□□ -0.74
CLIP3-201ENST00000360535 TMED3Q9Y3Q3 217 aa10.45□□□□□ -0.74
CLIP3-201ENST00000360535 hCG_38984A0A1B0GV85 526 aa10.44□□□□□ -0.74
CLIP3-201ENST00000360535 TRDCB7Z8K6 153 aa10.44□□□□□ -0.74
CLIP3-201ENST00000360535 CA11O75493 328 aa10.44□□□□□ -0.74
CLIP3-201ENST00000360535 CLN5O75503 358 aa10.44□□□□□ -0.74
CLIP3-201ENST00000360535 CNOT4O95628 575 aaKnown RBP10.44□□□□□ -0.74
CLIP3-201ENST00000360535 CST2P09228 141 aa10.44□□□□□ -0.74
CLIP3-201ENST00000360535 RND3P61587 244 aa10.44□□□□□ -0.74
CLIP3-201ENST00000360535 EXT1Q16394 746 aa10.44□□□□□ -0.74
CLIP3-201ENST00000360535 AKR1C8PQ5T2L2 129 aa10.44□□□□□ -0.74
CLIP3-201ENST00000360535 SCRT1Q9BWW7 348 aa10.44□□□□□ -0.74
CLIP3-201ENST00000360535 GPR35Q9HC97 309 aa10.44□□□□□ -0.74
CLIP3-201ENST00000360535 ZFP92A6NM28 416 aa10.44□□□□□ -0.74
CLIP3-201ENST00000360535 GJE1A6NN92 205 aa10.44□□□□□ -0.74
CLIP3-201ENST00000360535 H3BQ15 152 aa10.44□□□□□ -0.74
CLIP3-201ENST00000360535 K7ESF4 209 aa10.44□□□□□ -0.74
CLIP3-201ENST00000360535 PLA2G5P39877 138 aa10.44□□□□□ -0.74
CLIP3-201ENST00000360535 RPS23P62266 143 aaKnown RBP10.44□□□□□ -0.74
CLIP3-201ENST00000360535 ZNF600Q6ZNG1 722 aa10.44□□□□□ -0.74
CLIP3-201ENST00000360535 THNSL2Q86YJ6 484 aa10.44□□□□□ -0.74
CLIP3-201ENST00000360535 CYB561D1Q8N8Q1 229 aa10.44□□□□□ -0.74
CLIP3-201ENST00000360535 C10orf35Q96D05 121 aa10.44□□□□□ -0.74
CLIP3-201ENST00000360535 SIT1Q9Y3P8 196 aa10.44□□□□□ -0.74
CLIP3-201ENST00000360535 ZNF732B4DXR9 585 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 PROB1E7EW31 1015 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 HSPA12AO43301 675 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 MRPL33O75394 65 aaKnown RBP10.43□□□□□ -0.74
CLIP3-201ENST00000360535 OR8U8P0C7N1 319 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 IAPPP10997 89 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 ZNF239Q16600 458 aaKnown RBP10.43□□□□□ -0.74
CLIP3-201ENST00000360535 C4orf17Q53FE4 359 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 MRPL21Q7Z2W9 205 aaKnown RBP10.43□□□□□ -0.74
CLIP3-201ENST00000360535 OR4D5Q8NGN0 318 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 MAFAQ8NHW3 353 aaPredicted RBP10.43□□□□□ -0.74
CLIP3-201ENST00000360535 TMEM222Q9H0R3 208 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 RNF122Q9H9V4 155 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 DECR2Q9NUI1 292 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 NOSIPQ9Y314 301 aaKnown RBP10.43□□□□□ -0.74
CLIP3-201ENST00000360535 STRAPQ9Y3F4 350 aaKnown RBP10.43□□□□□ -0.74
CLIP3-201ENST00000360535 OR6C6A6NF89 314 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 SYNGR1O43759 233 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 TMEM50AO95807 157 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 NGFP01138 241 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 FGF8P55075 233 aaPredicted RBP10.43□□□□□ -0.74
CLIP3-201ENST00000360535 ARF1P84077 181 aaKnown RBP10.43□□□□□ -0.74
CLIP3-201ENST00000360535 PRDX4Q13162 271 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 ZNF266Q14584 549 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 SPATA46Q5T0L3 261 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 LCN15Q6UWW0 184 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 LYPD6BQ8NI32 183 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 TCTEX1D2Q8WW35 142 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 INTS12Q96CB8 462 aaKnown RBP10.43□□□□□ -0.74
CLIP3-201ENST00000360535 RAB39BQ96DA2 213 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 PRRG4Q9BZD6 226 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 GNG13Q9P2W3 67 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 CHD3Q12873 2000 aaKnown RBP10.43□□□□□ -0.74
CLIP3-201ENST00000360535 MED13Q9UHV7 2174 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 ICE1Q9Y2F5 2266 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 PINLYPA6NC86 204 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 ZNF716A6NP11 495 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 K7N7A8 449 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 AGAP20933 346 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 MDKP21741 143 aaPredicted RBP10.43□□□□□ -0.74
CLIP3-201ENST00000360535 MLF1P58340 268 aa10.43□□□□□ -0.74
CLIP3-201ENST00000360535 RPL23AP62750 156 aaKnown RBP10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms