RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 SUMF2Q8NBJ7 301 aa17.79■□□□□ 0.44
CCDC88B-203ENST00000359902 TMEM178AQ8NBL3 297 aa17.79■□□□□ 0.44
CCDC88B-203ENST00000359902 NANOS1Q8WY41 292 aaKnown RBP17.79■□□□□ 0.44
CCDC88B-203ENST00000359902 TMEM222Q9H0R3 208 aa17.79■□□□□ 0.44
CCDC88B-203ENST00000359902 ZFP57Q9NU63 452 aa17.79■□□□□ 0.44
CCDC88B-203ENST00000359902 ATP23Q9Y6H3 246 aa17.79■□□□□ 0.44
CCDC88B-203ENST00000359902 IGKV1-6A0A0C4DH72 117 aa17.78■□□□□ 0.44
CCDC88B-203ENST00000359902 MED6O75586 246 aa17.78■□□□□ 0.44
CCDC88B-203ENST00000359902 SOX8P57073 446 aa17.78■□□□□ 0.44
CCDC88B-203ENST00000359902 TBC1D26Q86UD7 250 aa17.78■□□□□ 0.44
CCDC88B-203ENST00000359902 UBAC2Q8NBM4 344 aa17.78■□□□□ 0.44
CCDC88B-203ENST00000359902 SECTM1Q8WVN6 248 aa17.78■□□□□ 0.44
CCDC88B-203ENST00000359902 ZDHHC8Q9ULC8 765 aa17.78■□□□□ 0.44
CCDC88B-203ENST00000359902 KIR2DS1A0A191URI9 304 aa17.78■□□□□ 0.44
CCDC88B-203ENST00000359902 TUSC2O75896 110 aa17.78■□□□□ 0.44
CCDC88B-203ENST00000359902 GLAP06280 429 aa17.78■□□□□ 0.44
CCDC88B-203ENST00000359902 CA6P23280 308 aa17.78■□□□□ 0.44
CCDC88B-203ENST00000359902 KIR2DS4P43632 304 aa17.78■□□□□ 0.44
CCDC88B-203ENST00000359902 IL24Q13007 206 aa17.78■□□□□ 0.44
CCDC88B-203ENST00000359902 KIR2DS1Q14954 304 aa17.78■□□□□ 0.44
CCDC88B-203ENST00000359902 SPATA46Q5T0L3 261 aa17.78■□□□□ 0.44
CCDC88B-203ENST00000359902 C10orf91Q5T1B1 145 aa17.78■□□□□ 0.44
CCDC88B-203ENST00000359902 ZNF818PQ6ZRF7 136 aa17.78■□□□□ 0.44
CCDC88B-203ENST00000359902 LINC00596Q86U02 117 aa17.78■□□□□ 0.44
CCDC88B-203ENST00000359902 VASH2Q86V25 355 aa17.78■□□□□ 0.44
CCDC88B-203ENST00000359902 OR4D5Q8NGN0 318 aa17.78■□□□□ 0.44
CCDC88B-203ENST00000359902 GTF3AQ92664 365 aaKnown RBP17.78■□□□□ 0.44
CCDC88B-203ENST00000359902 TSNAXQ99598 290 aaKnown RBP17.78■□□□□ 0.44
CCDC88B-203ENST00000359902 USB1Q9BQ65 265 aaKnown RBP17.78■□□□□ 0.44
CCDC88B-203ENST00000359902 ZNF175Q9Y473 711 aa17.78■□□□□ 0.44
CCDC88B-203ENST00000359902 IGKV1D-13A0A0B4J2D9 117 aa17.77■□□□□ 0.44
CCDC88B-203ENST00000359902 FAM74A7A6NL05 159 aa17.77■□□□□ 0.44
CCDC88B-203ENST00000359902 C3orf80F5H4A9 247 aa17.77■□□□□ 0.44
CCDC88B-203ENST00000359902 ST8SIA3O43173 380 aa17.77■□□□□ 0.44
CCDC88B-203ENST00000359902 GPR137BO60478 399 aa17.77■□□□□ 0.44
CCDC88B-203ENST00000359902 IGKV1-13P0DP09 117 aa17.77■□□□□ 0.44
CCDC88B-203ENST00000359902 RND3P61587 244 aa17.77■□□□□ 0.44
CCDC88B-203ENST00000359902 IL13RA2Q14627 380 aa17.77■□□□□ 0.44
CCDC88B-203ENST00000359902 FAM74A3Q4VXF1 159 aa17.77■□□□□ 0.44
CCDC88B-203ENST00000359902 SPIN3Q5JUX0 258 aa17.77■□□□□ 0.44
CCDC88B-203ENST00000359902 GPR157Q5UAW9 335 aa17.77■□□□□ 0.44
CCDC88B-203ENST00000359902 C20orf204Q6ZNR8 217 aa17.77■□□□□ 0.44
CCDC88B-203ENST00000359902 OR51I2Q9H344 312 aa17.77■□□□□ 0.44
CCDC88B-203ENST00000359902 SPACA1Q9HBV2 294 aa17.77■□□□□ 0.44
CCDC88B-203ENST00000359902 TOR1AO14656 332 aa17.77■□□□□ 0.43
CCDC88B-203ENST00000359902 TNFSF10P50591 281 aa17.77■□□□□ 0.43
CCDC88B-203ENST00000359902 SRPXP78539 464 aa17.77■□□□□ 0.43
CCDC88B-203ENST00000359902 PMP22Q01453 160 aa17.77■□□□□ 0.43
CCDC88B-203ENST00000359902 FAM58AQ8N1B3 248 aa17.77■□□□□ 0.43
CCDC88B-203ENST00000359902 GAPTQ8N292 157 aa17.77■□□□□ 0.43
CCDC88B-203ENST00000359902 C17orf78Q8N4C9 275 aa17.77■□□□□ 0.43
CCDC88B-203ENST00000359902 ZNF565Q8N9K5 539 aa17.77■□□□□ 0.43
CCDC88B-203ENST00000359902 DMBX1Q8NFW5 382 aa17.77■□□□□ 0.43
CCDC88B-203ENST00000359902 MRPL30Q8TCC3 161 aaKnown RBP17.77■□□□□ 0.43
CCDC88B-203ENST00000359902 TMEM56Q96MV1 263 aa17.77■□□□□ 0.43
CCDC88B-203ENST00000359902 ARV1Q9H2C2 271 aa17.77■□□□□ 0.43
CCDC88B-203ENST00000359902 TMEM231Q9H6L2 316 aa17.77■□□□□ 0.43
CCDC88B-203ENST00000359902 TMEM56-RWDD3S4R434 201 aa17.77■□□□□ 0.43
CCDC88B-203ENST00000359902 TRAV24A0A0B4J272 114 aa17.76■□□□□ 0.43
CCDC88B-203ENST00000359902 GPR31O00270 319 aa17.76■□□□□ 0.43
CCDC88B-203ENST00000359902 HS3ST1O14792 307 aa17.76■□□□□ 0.43
CCDC88B-203ENST00000359902 CTXN2P0C2S0 81 aa17.76■□□□□ 0.43
CCDC88B-203ENST00000359902 P2RY1P47900 373 aa17.76■□□□□ 0.43
CCDC88B-203ENST00000359902 CAV2P51636 162 aa17.76■□□□□ 0.43
CCDC88B-203ENST00000359902 IGFBP7Q16270 282 aa17.76■□□□□ 0.43
CCDC88B-203ENST00000359902 GUCA2BQ16661 112 aa17.76■□□□□ 0.43
CCDC88B-203ENST00000359902 PUSL1Q8N0Z8 303 aaKnown RBP17.76■□□□□ 0.43
CCDC88B-203ENST00000359902 PKIBQ9C010 78 aa17.76■□□□□ 0.43
CCDC88B-203ENST00000359902 RIMS4Q9H426 269 aaPredicted RBP17.76■□□□□ 0.43
CCDC88B-203ENST00000359902 RHOFQ9HBH0 211 aa17.76■□□□□ 0.43
CCDC88B-203ENST00000359902 WFDC1Q9HC57 220 aa17.76■□□□□ 0.43
CCDC88B-203ENST00000359902 TREM1Q9NP99 234 aa17.76■□□□□ 0.43
CCDC88B-203ENST00000359902 UBE2J1Q9Y385 318 aaPredicted RBP17.76■□□□□ 0.43
CCDC88B-203ENST00000359902 NKX2-6A6NCS4 301 aa17.76■□□□□ 0.43
CCDC88B-203ENST00000359902 RHBDL1O75783 438 aa17.76■□□□□ 0.43
CCDC88B-203ENST00000359902 SLC34A2O95436 690 aa17.76■□□□□ 0.43
CCDC88B-203ENST00000359902 BLOC1S1P78537 153 aa17.76■□□□□ 0.43
CCDC88B-203ENST00000359902 BTNL8Q6UX41 500 aa17.76■□□□□ 0.43
CCDC88B-203ENST00000359902 MYPOPQ86VE0 399 aaPredicted RBP17.76■□□□□ 0.43
CCDC88B-203ENST00000359902 SVBPQ8N300 66 aa17.76■□□□□ 0.43
CCDC88B-203ENST00000359902 WNT2BQ93097 391 aa17.76■□□□□ 0.43
CCDC88B-203ENST00000359902 GMPPAQ96IJ6 420 aaPredicted RBP17.76■□□□□ 0.43
CCDC88B-203ENST00000359902 UQCC1Q9NVA1 299 aa17.76■□□□□ 0.43
CCDC88B-203ENST00000359902 POMT1Q9Y6A1 747 aa17.76■□□□□ 0.43
CCDC88B-203ENST00000359902 F8W036 122 aa17.75■□□□□ 0.43
CCDC88B-203ENST00000359902 ZNF14P17017 642 aaPredicted RBP17.75■□□□□ 0.43
CCDC88B-203ENST00000359902 RDH5Q92781 318 aa17.75■□□□□ 0.43
CCDC88B-203ENST00000359902 GPHA2Q96T91 129 aa17.75■□□□□ 0.43
CCDC88B-203ENST00000359902 TLNRD1Q9H1K6 362 aa17.75■□□□□ 0.43
CCDC88B-203ENST00000359902 RCL1Q9Y2P8 373 aaKnown RBP17.75■□□□□ 0.43
CCDC88B-203ENST00000359902 CARHSP1Q9Y2V2 147 aaKnown RBP17.75■□□□□ 0.43
CCDC88B-203ENST00000359902 MED12LQ86YW9 2145 aa17.75■□□□□ 0.43
CCDC88B-203ENST00000359902 TRBV6-6A0A0A6YYG2 114 aa17.75■□□□□ 0.43
CCDC88B-203ENST00000359902 CDS2O95674 445 aa17.75■□□□□ 0.43
CCDC88B-203ENST00000359902 CELA3BP08861 270 aa17.75■□□□□ 0.43
CCDC88B-203ENST00000359902 TBC1D28Q2M2D7 210 aa17.75■□□□□ 0.43
CCDC88B-203ENST00000359902 PCSK4Q6UW60 755 aa17.75■□□□□ 0.43
CCDC88B-203ENST00000359902 SELENOHQ8IZQ5 122 aaKnown RBP17.75■□□□□ 0.43
CCDC88B-203ENST00000359902 PARP11Q9NR21 331 aa17.75■□□□□ 0.43
CCDC88B-203ENST00000359902 FAM96BQ9Y3D0 163 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms