RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 WFDC6Q9BQY6 131 aa17.2■□□□□ 0.34
CCDC88B-202ENST00000356786 HRKO00198 91 aa17.2■□□□□ 0.34
CCDC88B-202ENST00000356786 GAPDHP04406 335 aaKnown RBP17.2■□□□□ 0.34
CCDC88B-202ENST00000356786 MMP9P14780 707 aa17.2■□□□□ 0.34
CCDC88B-202ENST00000356786 DRD3P35462 400 aa17.2■□□□□ 0.34
CCDC88B-202ENST00000356786 SRSF5Q13243 272 aaKnown RBP17.2■□□□□ 0.34
CCDC88B-202ENST00000356786 PRSS27Q9BQR3 290 aa17.2■□□□□ 0.34
CCDC88B-202ENST00000356786 TMEM191AQ9H0A3 160 aa17.2■□□□□ 0.34
CCDC88B-202ENST00000356786 ANGPTL4Q9BY76 406 aa17.2■□□□□ 0.34
CCDC88B-202ENST00000356786 RPS4Y1P22090 263 aaKnown RBP17.2■□□□□ 0.34
CCDC88B-202ENST00000356786 DDTP30046 118 aa17.2■□□□□ 0.34
CCDC88B-202ENST00000356786 KIR3DL2P43630 455 aa17.2■□□□□ 0.34
CCDC88B-202ENST00000356786 OR6X1Q8NH79 312 aa17.2■□□□□ 0.34
CCDC88B-202ENST00000356786 TMEM230Q96A57 120 aa17.2■□□□□ 0.34
CCDC88B-202ENST00000356786 WDR61Q9GZS3 305 aaKnown RBP17.2■□□□□ 0.34
CCDC88B-202ENST00000356786 SLC26A1Q9H2B4 701 aa17.2■□□□□ 0.34
CCDC88B-202ENST00000356786 FOCADQ5VW36 1801 aa17.19■□□□□ 0.34
CCDC88B-202ENST00000356786 A0A1W2PPC1 479 aa17.19■□□□□ 0.34
CCDC88B-202ENST00000356786 SEMA7AO75326 666 aa17.19■□□□□ 0.34
CCDC88B-202ENST00000356786 CD1AP06126 327 aa17.19■□□□□ 0.34
CCDC88B-202ENST00000356786 LILRA6Q6PI73 481 aa17.19■□□□□ 0.34
CCDC88B-202ENST00000356786 OR5D13Q8NGL4 314 aa17.19■□□□□ 0.34
CCDC88B-202ENST00000356786 GPR61Q9BZJ8 451 aa17.19■□□□□ 0.34
CCDC88B-202ENST00000356786 LOC105371267A0A1B0GV96 52 aa17.19■□□□□ 0.34
CCDC88B-202ENST00000356786 OR3A1P47881 315 aa17.19■□□□□ 0.34
CCDC88B-202ENST00000356786 RUNX1Q01196 453 aa17.19■□□□□ 0.34
CCDC88B-202ENST00000356786 FZD5Q13467 585 aa17.19■□□□□ 0.34
CCDC88B-202ENST00000356786 HOGA1Q86XE5 327 aa17.19■□□□□ 0.34
CCDC88B-202ENST00000356786 RNF133Q8WVZ7 376 aa17.19■□□□□ 0.34
CCDC88B-202ENST00000356786 FOXQ1Q9C009 403 aa17.19■□□□□ 0.34
CCDC88B-202ENST00000356786 PTX4Q96A99 478 aa17.19■□□□□ 0.34
CCDC88B-202ENST00000356786 LPAR5Q9H1C0 372 aa17.19■□□□□ 0.34
CCDC88B-202ENST00000356786 TRGV10A0A0A0MS01 117 aa17.18■□□□□ 0.34
CCDC88B-202ENST00000356786 A0A1W2PPV9 198 aa17.18■□□□□ 0.34
CCDC88B-202ENST00000356786 CSN3P07498 182 aa17.18■□□□□ 0.34
CCDC88B-202ENST00000356786 MDH2P40926 338 aaKnown RBP17.18■□□□□ 0.34
CCDC88B-202ENST00000356786 COL11A1P12107 1806 aaPredicted RBP17.18■□□□□ 0.34
CCDC88B-202ENST00000356786 COX19Q49B96 90 aa17.18■□□□□ 0.34
CCDC88B-202ENST00000356786 COL5A1-AS1Q5SY13 56 aa17.18■□□□□ 0.34
CCDC88B-202ENST00000356786 MRPL54Q6P161 138 aaKnown RBP17.18■□□□□ 0.34
CCDC88B-202ENST00000356786 FAM181AQ8N9Y4 354 aa17.18■□□□□ 0.34
CCDC88B-202ENST00000356786 SH2D2AQ9NP31 389 aa17.18■□□□□ 0.34
CCDC88B-202ENST00000356786 IGFBP7Q16270 282 aa17.18■□□□□ 0.34
CCDC88B-202ENST00000356786 OR1L4Q8NGR5 311 aa17.18■□□□□ 0.34
CCDC88B-202ENST00000356786 RAB24Q969Q5 203 aa17.18■□□□□ 0.34
CCDC88B-202ENST00000356786 SNURFLB1AK76 121 aa17.18■□□□□ 0.34
CCDC88B-202ENST00000356786 IER3P46695 156 aa17.18■□□□□ 0.34
CCDC88B-202ENST00000356786 OR1A1Q9P1Q5 309 aa17.18■□□□□ 0.34
CCDC88B-202ENST00000356786 SPTA1P02549 2419 aa17.18■□□□□ 0.34
CCDC88B-202ENST00000356786 MPTX1A8MV57 137 aa17.17■□□□□ 0.34
CCDC88B-202ENST00000356786 ACAA2P42765 397 aaKnown RBP17.17■□□□□ 0.34
CCDC88B-202ENST00000356786 GGTLC2Q14390 218 aa17.17■□□□□ 0.34
CCDC88B-202ENST00000356786 C9orf50Q5SZB4 431 aa17.17■□□□□ 0.34
CCDC88B-202ENST00000356786 OR1L3Q8NH93 324 aa17.17■□□□□ 0.34
CCDC88B-202ENST00000356786 GREB1LQ9C091 1923 aaPredicted RBP17.17■□□□□ 0.34
CCDC88B-202ENST00000356786 IGHV3-43A0A0B4J1X8 118 aa17.17■□□□□ 0.34
CCDC88B-202ENST00000356786 PMS2P1A4D2B8 440 aa17.17■□□□□ 0.34
CCDC88B-202ENST00000356786 FAM87AP0C7U9 286 aa17.17■□□□□ 0.34
CCDC88B-202ENST00000356786 SCGB1C2P0DMR2 95 aa17.17■□□□□ 0.34
CCDC88B-202ENST00000356786 IGHV3-43DP0DP04 118 aa17.17■□□□□ 0.34
CCDC88B-202ENST00000356786 BOD1Q96IK1 185 aa17.17■□□□□ 0.34
CCDC88B-202ENST00000356786 TRDCB7Z8K6 153 aa17.17■□□□□ 0.34
CCDC88B-202ENST00000356786 CIDEAO60543 219 aa17.17■□□□□ 0.34
CCDC88B-202ENST00000356786 NEURL1O76050 574 aa17.17■□□□□ 0.34
CCDC88B-202ENST00000356786 ABLIM2Q6H8Q1 611 aa17.17■□□□□ 0.34
CCDC88B-202ENST00000356786 DOK5Q9P104 306 aa17.17■□□□□ 0.34
CCDC88B-202ENST00000356786 SCN3AQ9NY46 2000 aa17.17■□□□□ 0.34
CCDC88B-202ENST00000356786 CCL2P13500 99 aa17.17■□□□□ 0.34
CCDC88B-202ENST00000356786 GABRG2P18507 467 aa17.17■□□□□ 0.34
CCDC88B-202ENST00000356786 FAM3BP58499 235 aaPredicted RBP17.17■□□□□ 0.34
CCDC88B-202ENST00000356786 LYG1Q8N1E2 194 aa17.17■□□□□ 0.34
CCDC88B-202ENST00000356786 OR1L6Q8NGR2 347 aa17.17■□□□□ 0.34
CCDC88B-202ENST00000356786 HDHD3Q9BSH5 251 aaPredicted RBP17.17■□□□□ 0.34
CCDC88B-202ENST00000356786 CYR61O00622 381 aa17.16■□□□□ 0.34
CCDC88B-202ENST00000356786 BCL2P10415 239 aa17.16■□□□□ 0.34
CCDC88B-202ENST00000356786 OPRK1P41145 380 aa17.16■□□□□ 0.34
CCDC88B-202ENST00000356786 Q1RN00 199 aa17.16■□□□□ 0.34
CCDC88B-202ENST00000356786 MRGPRFQ96AM1 343 aa17.16■□□□□ 0.34
CCDC88B-202ENST00000356786 TRPM6Q9BX84 2022 aa17.16■□□□□ 0.34
CCDC88B-202ENST00000356786 SLC22A20A6NK97 555 aa17.16■□□□□ 0.34
CCDC88B-202ENST00000356786 CPEB3Q8NE35 698 aaKnown RBP17.16■□□□□ 0.34
CCDC88B-202ENST00000356786 DTD1Q8TEA8 209 aa17.16■□□□□ 0.34
CCDC88B-202ENST00000356786 PGA4P0DJD7 388 aa17.16■□□□□ 0.34
CCDC88B-202ENST00000356786 PGA5P0DJD9 388 aa17.16■□□□□ 0.34
CCDC88B-202ENST00000356786 LAMTOR1Q6IAA8 161 aa17.16■□□□□ 0.34
CCDC88B-202ENST00000356786 TRAT1Q6PIZ9 186 aa17.16■□□□□ 0.34
CCDC88B-202ENST00000356786 SGMS2Q8NHU3 365 aa17.16■□□□□ 0.34
CCDC88B-202ENST00000356786 OIT3Q8WWZ8 545 aa17.16■□□□□ 0.34
CCDC88B-202ENST00000356786 OR2A4O95047 310 aa17.16■□□□□ 0.34
CCDC88B-202ENST00000356786 KLK2P20151 261 aa17.16■□□□□ 0.34
CCDC88B-202ENST00000356786 SPINK2P20155 84 aa17.16■□□□□ 0.34
CCDC88B-202ENST00000356786 RBPJQ06330 500 aa17.16■□□□□ 0.34
CCDC88B-202ENST00000356786 VAX1Q5SQQ9 334 aa17.16■□□□□ 0.34
CCDC88B-202ENST00000356786 C16orf82Q7Z2V1 217 aa17.16■□□□□ 0.34
CCDC88B-202ENST00000356786 OR2T6Q8NHC8 308 aa17.16■□□□□ 0.34
CCDC88B-202ENST00000356786 TMEM56Q96MV1 263 aa17.16■□□□□ 0.34
CCDC88B-202ENST00000356786 OR2A7Q96R45 310 aa17.16■□□□□ 0.34
CCDC88B-202ENST00000356786 CES1P1Q9UKY3 287 aa17.16■□□□□ 0.34
CCDC88B-202ENST00000356786 H1FOOQ8IZA3 346 aaPredicted RBP17.15■□□□□ 0.34
CCDC88B-202ENST00000356786 BLNKQ8WV28 456 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms