RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 VAMP2P63027 116 aa13.75□□□□□ -0.21
HMGA1-202ENST00000347617 ACSF3Q4G176 576 aaPredicted RBP13.75□□□□□ -0.21
HMGA1-202ENST00000347617 C6orf201Q7Z4U5 140 aa13.75□□□□□ -0.21
HMGA1-202ENST00000347617 C1QL2Q7Z5L3 287 aa13.75□□□□□ -0.21
HMGA1-202ENST00000347617 WDFY1Q8IWB7 410 aa13.75□□□□□ -0.21
HMGA1-202ENST00000347617 TMEM183AQ8IXX5 376 aa13.75□□□□□ -0.21
HMGA1-202ENST00000347617 CLDND2Q8NHS1 167 aa13.75□□□□□ -0.21
HMGA1-202ENST00000347617 MRGPRX4Q96LA9 322 aa13.75□□□□□ -0.21
HMGA1-202ENST00000347617 ZNF286AQ9HBT8 521 aa13.75□□□□□ -0.21
HMGA1-202ENST00000347617 ZNF319Q9P2F9 582 aa13.75□□□□□ -0.21
HMGA1-202ENST00000347617 B3GAT1Q9P2W7 334 aa13.75□□□□□ -0.21
HMGA1-202ENST00000347617 LIPGQ9Y5X9 500 aa13.75□□□□□ -0.21
HMGA1-202ENST00000347617 VCANP13611 3396 aa13.75□□□□□ -0.21
HMGA1-202ENST00000347617 C17orf51A8MQB3 221 aa13.74□□□□□ -0.21
HMGA1-202ENST00000347617 PRR33A8MZF0 331 aa13.74□□□□□ -0.21
HMGA1-202ENST00000347617 TRDCB7Z8K6 153 aa13.74□□□□□ -0.21
HMGA1-202ENST00000347617 TP53I11O14683 189 aa13.74□□□□□ -0.21
HMGA1-202ENST00000347617 MT-CO3P00414 261 aa13.74□□□□□ -0.21
HMGA1-202ENST00000347617 RPL23AP62750 156 aaKnown RBP13.74□□□□□ -0.21
HMGA1-202ENST00000347617 CCL20P78556 96 aa13.74□□□□□ -0.21
HMGA1-202ENST00000347617 SSPNQ14714 243 aa13.74□□□□□ -0.21
HMGA1-202ENST00000347617 TMEM164Q5U3C3 297 aa13.74□□□□□ -0.21
HMGA1-202ENST00000347617 CDPF1Q6NVV7 123 aa13.74□□□□□ -0.21
HMGA1-202ENST00000347617 ZNF343Q6P1L6 599 aa13.74□□□□□ -0.21
HMGA1-202ENST00000347617 CYB561D1Q8N8Q1 229 aa13.74□□□□□ -0.21
HMGA1-202ENST00000347617 OR52M1Q8NGK5 317 aa13.74□□□□□ -0.21
HMGA1-202ENST00000347617 TOMM40LQ969M1 308 aa13.74□□□□□ -0.21
HMGA1-202ENST00000347617 SPACA9Q96E40 222 aaPredicted RBP13.74□□□□□ -0.21
HMGA1-202ENST00000347617 P2RX4Q99571 388 aa13.74□□□□□ -0.21
HMGA1-202ENST00000347617 NDUFAF3Q9BU61 184 aa13.74□□□□□ -0.21
HMGA1-202ENST00000347617 LOC102725191A0A1B0GVB3 256 aa13.73□□□□□ -0.21
HMGA1-202ENST00000347617 OR2J2O76002 312 aa13.73□□□□□ -0.21
HMGA1-202ENST00000347617 GCGP01275 180 aa13.73□□□□□ -0.21
HMGA1-202ENST00000347617 JMJD7P0C870 316 aa13.73□□□□□ -0.21
HMGA1-202ENST00000347617 FKBP2P26885 142 aaKnown RBP13.73□□□□□ -0.21
HMGA1-202ENST00000347617 IL2RGP31785 369 aa13.73□□□□□ -0.21
HMGA1-202ENST00000347617 HERV-K104P61576 105 aa13.73□□□□□ -0.21
HMGA1-202ENST00000347617 HIST3H3Q16695 136 aa13.73□□□□□ -0.21
HMGA1-202ENST00000347617 HAGHQ16775 308 aa13.73□□□□□ -0.21
HMGA1-202ENST00000347617 COA6Q5JTJ3 125 aaKnown RBP13.73□□□□□ -0.21
HMGA1-202ENST00000347617 C16orf47Q6ZP98 133 aaPredicted RBP13.73□□□□□ -0.21
HMGA1-202ENST00000347617 H1FOOQ8IZA3 346 aaPredicted RBP13.73□□□□□ -0.21
HMGA1-202ENST00000347617 ZFP62Q8NB50 900 aaPredicted RBP13.73□□□□□ -0.21
HMGA1-202ENST00000347617 FRZBQ92765 325 aa13.73□□□□□ -0.21
HMGA1-202ENST00000347617 RASL10BQ96S79 203 aa13.73□□□□□ -0.21
HMGA1-202ENST00000347617 HIST1H2BLQ99880 126 aa13.73□□□□□ -0.21
HMGA1-202ENST00000347617 SOX7Q9BT81 388 aa13.73□□□□□ -0.21
HMGA1-202ENST00000347617 EMC6Q9BV81 110 aa13.73□□□□□ -0.21
HMGA1-202ENST00000347617 ELL3Q9HB65 397 aaPredicted RBP13.73□□□□□ -0.21
HMGA1-202ENST00000347617 PLSCR2Q9NRY7 297 aa13.73□□□□□ -0.21
HMGA1-202ENST00000347617 CISD1Q9NZ45 108 aaKnown RBP13.73□□□□□ -0.21
HMGA1-202ENST00000347617 RNF150Q9ULK6 438 aa13.73□□□□□ -0.21
HMGA1-202ENST00000347617 CLEC18AA5D8T8 446 aa13.73□□□□□ -0.21
HMGA1-202ENST00000347617 GEMIN2O14893 280 aaKnown RBP13.73□□□□□ -0.21
HMGA1-202ENST00000347617 DFFBO76075 338 aa13.73□□□□□ -0.21
HMGA1-202ENST00000347617 GABRR1P24046 479 aa13.73□□□□□ -0.21
HMGA1-202ENST00000347617 CD200P41217 278 aa13.73□□□□□ -0.21
HMGA1-202ENST00000347617 IL24Q13007 206 aa13.73□□□□□ -0.21
HMGA1-202ENST00000347617 SP6Q3SY56 376 aa13.73□□□□□ -0.21
HMGA1-202ENST00000347617 CLEC18CQ8NCF0 446 aa13.73□□□□□ -0.21
HMGA1-202ENST00000347617 ABHD5Q8WTS1 349 aa13.73□□□□□ -0.21
HMGA1-202ENST00000347617 THAP3Q8WTV1 239 aaPredicted RBP13.73□□□□□ -0.21
HMGA1-202ENST00000347617 TMEM56Q96MV1 263 aa13.73□□□□□ -0.21
HMGA1-202ENST00000347617 OXGR1Q96P68 337 aa13.73□□□□□ -0.21
HMGA1-202ENST00000347617 NEU1Q99519 415 aa13.73□□□□□ -0.21
HMGA1-202ENST00000347617 GPR87Q9BY21 358 aa13.73□□□□□ -0.21
HMGA1-202ENST00000347617 CDH20Q9HBT6 801 aa13.73□□□□□ -0.21
HMGA1-202ENST00000347617 ZNF160Q9HCG1 818 aa13.73□□□□□ -0.21
HMGA1-202ENST00000347617 DCAF16Q9NXF7 216 aa13.73□□□□□ -0.21
HMGA1-202ENST00000347617 TMEM56-RWDD3S4R434 201 aa13.73□□□□□ -0.21
HMGA1-202ENST00000347617 A0A0C4DFX4 3053 aa13.72□□□□□ -0.21
HMGA1-202ENST00000347617 A0A1B0GU03 582 aa13.72□□□□□ -0.21
HMGA1-202ENST00000347617 IGSF23A1L1A6 192 aa13.72□□□□□ -0.21
HMGA1-202ENST00000347617 PHF1O43189 567 aaPredicted RBP13.72□□□□□ -0.21
HMGA1-202ENST00000347617 NDUFB7P17568 137 aa13.72□□□□□ -0.21
HMGA1-202ENST00000347617 KLK2P20151 261 aa13.72□□□□□ -0.21
HMGA1-202ENST00000347617 PTGDSP41222 190 aa13.72□□□□□ -0.21
HMGA1-202ENST00000347617 GUCA1AP43080 201 aaPredicted RBP13.72□□□□□ -0.21
HMGA1-202ENST00000347617 FAM69BQ5VUD6 431 aa13.72□□□□□ -0.21
HMGA1-202ENST00000347617 ASCL4Q6XD76 172 aa13.72□□□□□ -0.21
HMGA1-202ENST00000347617 PIP4P1Q86T03 277 aa13.72□□□□□ -0.21
HMGA1-202ENST00000347617 ZNF100Q8IYN0 542 aa13.72□□□□□ -0.21
HMGA1-202ENST00000347617 TMEM252Q8N6L7 170 aa13.72□□□□□ -0.21
HMGA1-202ENST00000347617 GJC3Q8NFK1 279 aa13.72□□□□□ -0.21
HMGA1-202ENST00000347617 OR5D18Q8NGL1 313 aa13.72□□□□□ -0.21
HMGA1-202ENST00000347617 MUC3AQ02505 3323 aa13.72□□□□□ -0.21
HMGA1-202ENST00000347617 A0A087WZY1 265 aa13.71□□□□□ -0.21
HMGA1-202ENST00000347617 A0A1B0GV50 99 aa13.71□□□□□ -0.21
HMGA1-202ENST00000347617 FAM24AA6NFZ4 105 aa13.71□□□□□ -0.21
HMGA1-202ENST00000347617 A8MWP6 167 aa13.71□□□□□ -0.21
HMGA1-202ENST00000347617 C21orf140B9A014 251 aa13.71□□□□□ -0.21
HMGA1-202ENST00000347617 PHOX2AO14813 284 aa13.71□□□□□ -0.21
HMGA1-202ENST00000347617 TRAF3IP2O43734 574 aaPredicted RBP13.71□□□□□ -0.21
HMGA1-202ENST00000347617 ZNF41P51814 821 aaPredicted RBP13.71□□□□□ -0.21
HMGA1-202ENST00000347617 TAS2R30P59541 319 aa13.71□□□□□ -0.21
HMGA1-202ENST00000347617 FOXF1Q12946 379 aa13.71□□□□□ -0.21
HMGA1-202ENST00000347617 CHAF1BQ13112 559 aa13.71□□□□□ -0.21
HMGA1-202ENST00000347617 CNN3Q15417 329 aaKnown RBP13.71□□□□□ -0.21
HMGA1-202ENST00000347617 TGIF2LYQ8IUE0 185 aa13.71□□□□□ -0.21
HMGA1-202ENST00000347617 CMTM1Q8IZ96 169 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms