RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 SRSF6Q13247 344 aaKnown RBP16.56■□□□□ 0.24
COL9A3-201ENST00000343916 SPIN3Q5JUX0 258 aa16.56■□□□□ 0.24
COL9A3-201ENST00000343916 MYPOPQ86VE0 399 aaPredicted RBP16.56■□□□□ 0.24
COL9A3-201ENST00000343916 MKXQ8IYA7 352 aa16.56■□□□□ 0.24
COL9A3-201ENST00000343916 LRTM2Q8N967 370 aa16.56■□□□□ 0.24
COL9A3-201ENST00000343916 OR5A2Q8NGI9 324 aa16.56■□□□□ 0.24
COL9A3-201ENST00000343916 OR5P3Q8WZ94 311 aa16.56■□□□□ 0.24
COL9A3-201ENST00000343916 C12orf57Q99622 126 aa16.56■□□□□ 0.24
COL9A3-201ENST00000343916 FAM90A10PA6NDY2 464 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 FAM90A18PA6NE21 464 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 FAM90A16PA6NEW6 464 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 FAM90A20PA6NIJ5 464 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 FAM90A8PA6NJQ4 464 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 SLC22A20A6NK97 555 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 FAM90A7PA6NKC0 464 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 FAM90A22PA8MWA6 464 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 FAM90A12PA8MX19 464 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 FAM90A5PA8MXJ8 464 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 FAM90A23PA8MXZ1 464 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 H7C1Q1 480 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 HS3ST1O14792 307 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 FAM90A15PP0C7V4 464 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 FAM90A13PP0C7W8 464 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 FAM90A14PP0C7W9 464 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 FAM90A24PP0C7X0 464 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 CA6P23280 308 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 PMELP40967 661 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 FBXW9Q5XUX1 488 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 SAXO1Q8IYX7 474 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 LGI3Q8N145 548 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 C2CD4CQ8TF44 421 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 C3orf85A0A1B0GTC6 90 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 MPPED1O15442 326 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 MED6O75586 246 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 NFYBP25208 207 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 ID4P47928 161 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 HOXA1P49639 335 aaPredicted RBP16.55■□□□□ 0.24
COL9A3-201ENST00000343916 TRIP6Q15654 476 aaKnown RBP16.55■□□□□ 0.24
COL9A3-201ENST00000343916 TMEM268Q5VZI3 342 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 DHRS7BQ6IAN0 325 aaPredicted RBP16.55■□□□□ 0.24
COL9A3-201ENST00000343916 FBXW12Q6X9E4 464 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 C20orf204Q6ZNR8 217 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 RDH5Q92781 318 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 PARP12Q9H0J9 701 aaKnown RBP16.55■□□□□ 0.24
COL9A3-201ENST00000343916 MMP26Q9NRE1 261 aa16.55■□□□□ 0.24
COL9A3-201ENST00000343916 RCC2Q9P258 522 aaKnown RBP16.55■□□□□ 0.24
COL9A3-201ENST00000343916 CARHSP1Q9Y2V2 147 aaKnown RBP16.55■□□□□ 0.24
COL9A3-201ENST00000343916 IGKV1D-13A0A0B4J2D9 117 aa16.54■□□□□ 0.24
COL9A3-201ENST00000343916 ANKRD30BLA7E2S9 258 aa16.54■□□□□ 0.24
COL9A3-201ENST00000343916 RHBDL1O75783 438 aa16.54■□□□□ 0.24
COL9A3-201ENST00000343916 IGKV1-13P0DP09 117 aa16.54■□□□□ 0.24
COL9A3-201ENST00000343916 ZNF818PQ6ZRF7 136 aa16.54■□□□□ 0.24
COL9A3-201ENST00000343916 ZFP82Q8N141 532 aa16.54■□□□□ 0.24
COL9A3-201ENST00000343916 CCDC71LQ8N9Z2 235 aa16.54■□□□□ 0.24
COL9A3-201ENST00000343916 UQCC1Q9NVA1 299 aa16.54■□□□□ 0.24
COL9A3-201ENST00000343916 ZDHHC8Q9ULC8 765 aa16.54■□□□□ 0.24
COL9A3-201ENST00000343916 TK1P04183 234 aa16.54■□□□□ 0.24
COL9A3-201ENST00000343916 CELA3BP08861 270 aa16.54■□□□□ 0.24
COL9A3-201ENST00000343916 C10orf91Q5T1B1 145 aa16.54■□□□□ 0.24
COL9A3-201ENST00000343916 BCL2L2Q92843 193 aaPredicted RBP16.54■□□□□ 0.24
COL9A3-201ENST00000343916 SMIM8Q96KF7 97 aa16.54■□□□□ 0.24
COL9A3-201ENST00000343916 FAM86C1Q9NVL1 165 aa16.54■□□□□ 0.24
COL9A3-201ENST00000343916 IGKV1-6A0A0C4DH72 117 aa16.53■□□□□ 0.24
COL9A3-201ENST00000343916 E5RGE8 158 aa16.53■□□□□ 0.24
COL9A3-201ENST00000343916 AGPAT2O15120 278 aa16.53■□□□□ 0.24
COL9A3-201ENST00000343916 WISP2O76076 250 aa16.53■□□□□ 0.24
COL9A3-201ENST00000343916 SNAPINO95295 136 aa16.53■□□□□ 0.24
COL9A3-201ENST00000343916 DPPA2Q7Z7J5 298 aa16.53■□□□□ 0.24
COL9A3-201ENST00000343916 TBC1D26Q86UD7 250 aa16.53■□□□□ 0.24
COL9A3-201ENST00000343916 GCNT2Q8N0V5 402 aa16.53■□□□□ 0.24
COL9A3-201ENST00000343916 SUMF2Q8NBJ7 301 aa16.53■□□□□ 0.24
COL9A3-201ENST00000343916 USB1Q9BQ65 265 aaKnown RBP16.53■□□□□ 0.24
COL9A3-201ENST00000343916 PLSCR2Q9NRY7 297 aa16.53■□□□□ 0.24
COL9A3-201ENST00000343916 NSG2Q9Y328 171 aa16.53■□□□□ 0.24
COL9A3-201ENST00000343916 EIF5AP63241 154 aaKnown RBP16.53■□□□□ 0.24
COL9A3-201ENST00000343916 MPV17LQ2QL34 196 aa16.53■□□□□ 0.24
COL9A3-201ENST00000343916 GAPTQ8N292 157 aa16.53■□□□□ 0.24
COL9A3-201ENST00000343916 DMXL1Q9Y485 3027 aa16.52■□□□□ 0.24
COL9A3-201ENST00000343916 IGHV3-64DA0A0J9YX35 117 aa16.52■□□□□ 0.24
COL9A3-201ENST00000343916 JTBO76095 146 aa16.52■□□□□ 0.24
COL9A3-201ENST00000343916 SPP1P10451 314 aa16.52■□□□□ 0.24
COL9A3-201ENST00000343916 KCNJ3P48549 501 aa16.52■□□□□ 0.24
COL9A3-201ENST00000343916 PJVKQ0ZLH3 352 aa16.52■□□□□ 0.24
COL9A3-201ENST00000343916 SUMF1Q8NBK3 374 aa16.52■□□□□ 0.24
COL9A3-201ENST00000343916 PLEKHA2Q9HB19 425 aa16.52■□□□□ 0.24
COL9A3-201ENST00000343916 NKX2-6A6NCS4 301 aa16.52■□□□□ 0.23
COL9A3-201ENST00000343916 HSD17B6O14756 317 aa16.52■□□□□ 0.23
COL9A3-201ENST00000343916 NKX2-8O15522 239 aa16.52■□□□□ 0.23
COL9A3-201ENST00000343916 GALR2O43603 387 aaPredicted RBP16.52■□□□□ 0.23
COL9A3-201ENST00000343916 MUC1P15941 1255 aaPredicted RBP16.52■□□□□ 0.23
COL9A3-201ENST00000343916 EIF5AL1Q6IS14 154 aaKnown RBP16.52■□□□□ 0.23
COL9A3-201ENST00000343916 Q6ZS49 121 aa16.52■□□□□ 0.23
COL9A3-201ENST00000343916 POM121Q96HA1 1249 aa16.52■□□□□ 0.23
COL9A3-201ENST00000343916 TMEM222Q9H0R3 208 aa16.52■□□□□ 0.23
COL9A3-201ENST00000343916 RHOFQ9HBH0 211 aa16.52■□□□□ 0.23
COL9A3-201ENST00000343916 WFDC1Q9HC57 220 aa16.52■□□□□ 0.23
COL9A3-201ENST00000343916 SULT1A2P50226 295 aa16.51■□□□□ 0.23
COL9A3-201ENST00000343916 ASCL1P50553 236 aa16.51■□□□□ 0.23
COL9A3-201ENST00000343916 ERVS71-1P61550 626 aa16.51■□□□□ 0.23
COL9A3-201ENST00000343916 GNG3P63215 75 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms