RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 NHLH2Q02577 135 aa8.84□□□□□ -0.99
LIMA1-201ENST00000341247 ZNF169Q14929 603 aaPredicted RBP8.84□□□□□ -0.99
LIMA1-201ENST00000341247 HERPUD1Q15011 391 aa8.84□□□□□ -0.99
LIMA1-201ENST00000341247 TMEM211Q6ICI0 200 aa8.84□□□□□ -0.99
LIMA1-201ENST00000341247 LIAT1Q6ZQX7 453 aa8.84□□□□□ -0.99
LIMA1-201ENST00000341247 ZNF818PQ6ZRF7 136 aa8.84□□□□□ -0.99
LIMA1-201ENST00000341247 SUMF2Q8NBJ7 301 aa8.84□□□□□ -0.99
LIMA1-201ENST00000341247 SYT3Q9BQG1 590 aa8.84□□□□□ -0.99
LIMA1-201ENST00000341247 PIGMQ9H3S5 423 aa8.84□□□□□ -0.99
LIMA1-201ENST00000341247 ESRP2Q9H6T0 727 aaKnown RBP8.84□□□□□ -0.99
LIMA1-201ENST00000341247 CCL28Q9NRJ3 127 aa8.84□□□□□ -0.99
LIMA1-201ENST00000341247 FZR1Q9UM11 496 aa8.84□□□□□ -0.99
LIMA1-201ENST00000341247 NKX2-6A6NCS4 301 aa8.84□□□□□ -0.99
LIMA1-201ENST00000341247 SIRPB1O00241 398 aa8.84□□□□□ -0.99
LIMA1-201ENST00000341247 AGFG2O95081 481 aa8.84□□□□□ -0.99
LIMA1-201ENST00000341247 TK1P04183 234 aa8.84□□□□□ -0.99
LIMA1-201ENST00000341247 FAM157CP0CG43 387 aa8.84□□□□□ -0.99
LIMA1-201ENST00000341247 GNRHRP30968 328 aa8.84□□□□□ -0.99
LIMA1-201ENST00000341247 LPAR6P43657 344 aa8.84□□□□□ -0.99
LIMA1-201ENST00000341247 TBC1D26Q86UD7 250 aa8.84□□□□□ -0.99
LIMA1-201ENST00000341247 ARL11Q969Q4 196 aa8.84□□□□□ -0.99
LIMA1-201ENST00000341247 PARD6AQ9NPB6 346 aa8.84□□□□□ -0.99
LIMA1-201ENST00000341247 RFNGQ9Y644 331 aa8.84□□□□□ -0.99
LIMA1-201ENST00000341247 CSMD1Q96PZ7 3565 aa8.84□□□□□ -0.99
LIMA1-201ENST00000341247 F8W036 122 aa8.84□□□□□ -0.99
LIMA1-201ENST00000341247 BLOC1S1P78537 153 aa8.84□□□□□ -0.99
LIMA1-201ENST00000341247 NRN1LQ496H8 165 aa8.84□□□□□ -0.99
LIMA1-201ENST00000341247 LGI3Q8N145 548 aa8.84□□□□□ -0.99
LIMA1-201ENST00000341247 HSD17B11Q8NBQ5 300 aa8.84□□□□□ -0.99
LIMA1-201ENST00000341247 OR4A4PQ8NGN8 299 aa8.84□□□□□ -0.99
LIMA1-201ENST00000341247 MSI2Q96DH6 328 aaKnown RBP8.84□□□□□ -0.99
LIMA1-201ENST00000341247 PLA2G2EQ9NZK7 142 aa8.84□□□□□ -0.99
LIMA1-201ENST00000341247 RCL1Q9Y2P8 373 aaKnown RBP8.84□□□□□ -0.99
LIMA1-201ENST00000341247 C3orf85A0A1B0GTC6 90 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 MPPED1O15442 326 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 C1QL1O75973 258 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 GRPP07492 148 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 ADCYAP1P18509 176 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 FHITP49789 147 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 CLINT1Q14677 625 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 STK11Q15831 433 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 IZUMO4Q1ZYL8 232 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 DPPA2Q7Z7J5 298 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 CCDC36Q8IYA8 594 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 EIF4E3Q8N5X7 224 aaKnown RBP8.83□□□□□ -1
LIMA1-201ENST00000341247 OR51H1Q8NH63 302 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 OR5P3Q8WZ94 311 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 TECTBQ96PL2 329 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 Q9N2K0 584 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 DECR2Q9NUI1 292 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 AMDHD2Q9Y303 409 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 ARHGAP21Q5T5U3 1957 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 ANKRD11Q6UB99 2663 aaPredicted RBP8.83□□□□□ -1
LIMA1-201ENST00000341247 IGKV1-6A0A0C4DH72 117 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 TFF1P04155 84 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 EPHA1P21709 976 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 CAV2P51636 162 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 UBE2NP61088 152 aaKnown RBP8.83□□□□□ -1
LIMA1-201ENST00000341247 ZNF695Q8IW36 515 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 TMEM178AQ8NBL3 297 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 BCL2L2Q92843 193 aaPredicted RBP8.83□□□□□ -1
LIMA1-201ENST00000341247 DNAJB11Q9UBS4 358 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 LPAR3Q9UBY5 353 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 FBXO9Q9UK97 447 aaPredicted RBP8.83□□□□□ -1
LIMA1-201ENST00000341247 FGF16O43320 207 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 LYL1P12980 280 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 CEBPDP49716 269 aaPredicted RBP8.83□□□□□ -1
LIMA1-201ENST00000341247 POLR2GP62487 172 aaKnown RBP eCLIP8.83□□□□□ -1
LIMA1-201ENST00000341247 MST1LQ2TV78 715 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 DNTTIP1Q9H147 329 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 OR14J1Q9UGF5 321 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 PIEZO2Q9H5I5 2752 aa8.83□□□□□ -1
LIMA1-201ENST00000341247 TMEM218A2RU14 115 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 CDIPTO14735 213 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 SLC34A2O95436 690 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 CST4P01036 141 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 FTH1P19P0C7X4 201 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 TNFSF10P50591 281 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 NAAAQ02083 359 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 ZNF616Q08AN1 781 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 ZNF273Q14593 569 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 Q6ZRG5 221 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 FAM58AQ8N1B3 248 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 CCDC71LQ8N9Z2 235 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 OR5A2Q8NGI9 324 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 KIRREL1Q96J84 757 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 IP6K3Q96PC2 410 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 SUCNR1Q9BXA5 334 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 WFDC1Q9HC57 220 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 FAM86C1Q9NVL1 165 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 FAM24AA6NFZ4 105 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 H0YL77 283 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 GNG3P63215 75 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 GALNT14Q96FL9 552 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 NKX6-2Q9C056 277 aaPredicted RBP8.82□□□□□ -1
LIMA1-201ENST00000341247 TLNRD1Q9H1K6 362 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 SH3BGRL3Q9H299 93 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 CDH20Q9HBT6 801 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 TUBD1Q9UJT1 453 aa8.82□□□□□ -1
LIMA1-201ENST00000341247 ZDHHC8Q9ULC8 765 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms