RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 FAM3AP98173 230 aa8.75□□□□□ -1.01
USP54-201ENST00000339859 DEFA5Q01523 94 aa8.75□□□□□ -1.01
USP54-201ENST00000339859 BAMBIQ13145 260 aa8.75□□□□□ -1.01
USP54-201ENST00000339859 ENDOGQ14249 297 aaKnown RBP8.75□□□□□ -1.01
USP54-201ENST00000339859 OR4C16Q8NGL9 310 aa8.75□□□□□ -1.01
USP54-201ENST00000339859 COA4Q9NYJ1 87 aa8.75□□□□□ -1.01
USP54-201ENST00000339859 SSSCA1O60232 199 aa8.75□□□□□ -1.01
USP54-201ENST00000339859 SPDEFO95238 335 aa8.75□□□□□ -1.01
USP54-201ENST00000339859 MUC1P15941 1255 aaPredicted RBP8.75□□□□□ -1.01
USP54-201ENST00000339859 SPANXN5Q5MJ07 72 aa8.75□□□□□ -1.01
USP54-201ENST00000339859 NRARPQ7Z6K4 114 aa8.75□□□□□ -1.01
USP54-201ENST00000339859 TMEM123Q8N131 208 aa8.75□□□□□ -1.01
USP54-201ENST00000339859 MRPL24Q96A35 216 aaKnown RBP8.75□□□□□ -1.01
USP54-201ENST00000339859 SSBP3Q9BWW4 388 aaPredicted RBP8.75□□□□□ -1.01
USP54-201ENST00000339859 YAE1D1Q9NRH1 226 aa8.75□□□□□ -1.01
USP54-201ENST00000339859 PITPNC1Q9UKF7 332 aa8.75□□□□□ -1.01
USP54-201ENST00000339859 PCM1Q15154 2024 aa8.75□□□□□ -1.01
USP54-201ENST00000339859 ZFP92A6NM28 416 aa8.75□□□□□ -1.01
USP54-201ENST00000339859 LEUTXA8MZ59 168 aa8.75□□□□□ -1.01
USP54-201ENST00000339859 DCTN6O00399 190 aa8.75□□□□□ -1.01
USP54-201ENST00000339859 INSL4Q14641 139 aa8.75□□□□□ -1.01
USP54-201ENST00000339859 ZNF436Q9C0F3 470 aaPredicted RBP8.75□□□□□ -1.01
USP54-201ENST00000339859 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.75□□□□□ -1.01
USP54-201ENST00000339859 CST4P01036 141 aa8.75□□□□□ -1.01
USP54-201ENST00000339859 TAS2R45P59539 299 aa8.75□□□□□ -1.01
USP54-201ENST00000339859 UBE2MP61081 183 aaKnown RBP8.75□□□□□ -1.01
USP54-201ENST00000339859 NCR3LG1Q68D85 454 aa8.75□□□□□ -1.01
USP54-201ENST00000339859 GGNQ86UU5 652 aa8.75□□□□□ -1.01
USP54-201ENST00000339859 OR5P3Q8WZ94 311 aa8.75□□□□□ -1.01
USP54-201ENST00000339859 SEC22CQ9BRL7 303 aa8.75□□□□□ -1.01
USP54-201ENST00000339859 PPIL3Q9H2H8 161 aaKnown RBP8.75□□□□□ -1.01
USP54-201ENST00000339859 RAB18Q9NP72 206 aa8.75□□□□□ -1.01
USP54-201ENST00000339859 MEX3AA1L020 520 aaKnown RBP8.74□□□□□ -1.01
USP54-201ENST00000339859 CRYM-AS1A6NIL9 109 aa8.74□□□□□ -1.01
USP54-201ENST00000339859 OR2H2O95918 312 aa8.74□□□□□ -1.01
USP54-201ENST00000339859 HBE1P02100 147 aa8.74□□□□□ -1.01
USP54-201ENST00000339859 FLYWCH2Q96CP2 140 aaKnown RBP8.74□□□□□ -1.01
USP54-201ENST00000339859 MISP3Q96FF7 219 aa8.74□□□□□ -1.01
USP54-201ENST00000339859 ZNF488Q96MN9 340 aa8.74□□□□□ -1.01
USP54-201ENST00000339859 IDI2-AS1Q9NZ38 188 aa8.74□□□□□ -1.01
USP54-201ENST00000339859 C3orf85A0A1B0GTC6 90 aa8.74□□□□□ -1.01
USP54-201ENST00000339859 LANCL1O43813 399 aa8.74□□□□□ -1.01
USP54-201ENST00000339859 TPPPO94811 219 aa8.74□□□□□ -1.01
USP54-201ENST00000339859 TGFBR1P36897 503 aa8.74□□□□□ -1.01
USP54-201ENST00000339859 SEZ6L2Q6UXD5 910 aa8.74□□□□□ -1.01
USP54-201ENST00000339859 POM121Q96HA1 1249 aa8.74□□□□□ -1.01
USP54-201ENST00000339859 THBDP07204 575 aa8.74□□□□□ -1.01
USP54-201ENST00000339859 MST1P26927 711 aa8.74□□□□□ -1.01
USP54-201ENST00000339859 CLINT1Q14677 625 aa8.74□□□□□ -1.01
USP54-201ENST00000339859 LRRC75AQ8NAA5 344 aa8.74□□□□□ -1.01
USP54-201ENST00000339859 PTX4Q96A99 478 aa8.74□□□□□ -1.01
USP54-201ENST00000339859 OR4E1P0C645 316 aa8.74□□□□□ -1.01
USP54-201ENST00000339859 IAPPP10997 89 aa8.74□□□□□ -1.01
USP54-201ENST00000339859 IRF3Q14653 427 aa8.74□□□□□ -1.01
USP54-201ENST00000339859 TMEM128Q5BJH2 165 aa8.74□□□□□ -1.01
USP54-201ENST00000339859 SLC25A42Q86VD7 318 aa8.74□□□□□ -1.01
USP54-201ENST00000339859 HSD17B10Q99714 261 aaKnown RBP8.74□□□□□ -1.01
USP54-201ENST00000339859 ABHD14AQ9BUJ0 271 aa8.74□□□□□ -1.01
USP54-201ENST00000339859 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.74□□□□□ -1.01
USP54-201ENST00000339859 SLC39A9Q9NUM3 307 aa8.74□□□□□ -1.01
USP54-201ENST00000339859 ZNF716A6NP11 495 aa8.74□□□□□ -1.01
USP54-201ENST00000339859 GOSR1O95249 250 aa8.74□□□□□ -1.01
USP54-201ENST00000339859 VDAC1P21796 283 aa8.74□□□□□ -1.01
USP54-201ENST00000339859 STARD4Q96DR4 205 aa8.74□□□□□ -1.01
USP54-201ENST00000339859 FAM212BQ9NTI7 297 aaPredicted RBP8.74□□□□□ -1.01
USP54-201ENST00000339859 HIF1ANQ9NWT6 349 aa8.74□□□□□ -1.01
USP54-201ENST00000339859 THY1P04216 161 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 ZNF826PQ6ZT77 177 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 ZNF486Q96H40 463 aaPredicted RBP8.73□□□□□ -1.01
USP54-201ENST00000339859 JMJD8Q96S16 334 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 CKAP5Q14008 2032 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 PPT1P50897 306 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 RNFT1Q5M7Z0 435 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 XAF1Q6GPH4 301 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 THNSL2Q86YJ6 484 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 LYSMD2Q8IV50 215 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 C14orf79Q96F83 325 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 C2orf50Q96LR7 162 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 C1QTNF5Q9BXJ0 243 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 C17orf100A8MU93 164 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 IQCF6A8MYZ5 107 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 FAM157AC9JC47 383 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 RAB29O14966 203 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 GAS1P54826 345 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 ARL16Q0P5N6 197 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 CST9LP1Q5W188 147 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 ACSM6Q6P461 480 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 RPS4Y2Q8TD47 263 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 ANXA10Q9UJ72 324 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 SH2D7A6NKC9 451 aaPredicted RBP8.73□□□□□ -1.01
USP54-201ENST00000339859 E5RGE8 158 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 SOCS1O15524 211 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 SSX5O60225 188 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 IGHV3-13P01766 116 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 IGHV3-7P01780 117 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 RBP4P02753 201 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 SP5Q6BEB4 398 aaPredicted RBP8.73□□□□□ -1.01
USP54-201ENST00000339859 C17orf107Q6ZR85 190 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 LILRB4Q8NHJ6 448 aa8.73□□□□□ -1.01
USP54-201ENST00000339859 ASB13Q8WXK3 278 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 113.1 ms