RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 LRRTM1Q86UE6 522 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 SLC38A6Q8IZM9 456 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 SLC35G3Q8N808 338 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 SCCPDHQ8NBX0 429 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 OR4A4PQ8NGN8 299 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 LILRB1Q8NHL6 650 aaPredicted RBP5.95□□□□□ -1.46
SF3B1-201ENST00000335508 RAB40CQ96S21 281 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 SRXN1Q9BYN0 137 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 TINAGL1Q9GZM7 467 aaPredicted RBP5.95□□□□□ -1.46
SF3B1-201ENST00000335508 SSUH2Q9Y2M2 353 aa5.95□□□□□ -1.46
SF3B1-201ENST00000335508 MTCL1Q9Y4B5 1905 aaKnown RBP5.95□□□□□ -1.46
SF3B1-201ENST00000335508 FAM221AA4D161 298 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 MBD3L4A6NDZ8 208 aaPredicted RBP5.94□□□□□ -1.46
SF3B1-201ENST00000335508 MBD3L3A6NE82 208 aaPredicted RBP5.94□□□□□ -1.46
SF3B1-201ENST00000335508 MBD3L5A6NJ08 208 aaPredicted RBP5.94□□□□□ -1.46
SF3B1-201ENST00000335508 HSPB6O14558 160 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 EFNA2O43921 213 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 HNF1AP20823 631 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 OTX1P32242 354 aaPredicted RBP5.94□□□□□ -1.46
SF3B1-201ENST00000335508 MPV17P39210 176 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 OR2B8PP59922 312 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 NHLH1Q02575 133 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 GPR157Q5UAW9 335 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 GLDNQ6ZMI3 551 aaPredicted RBP5.94□□□□□ -1.46
SF3B1-201ENST00000335508 BAP18Q8IXM2 172 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 TMEM104Q8NE00 496 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 MBD3L2Q8NHZ7 208 aaPredicted RBP5.94□□□□□ -1.46
SF3B1-201ENST00000335508 RNASE6Q93091 150 aaKnown RBP5.94□□□□□ -1.46
SF3B1-201ENST00000335508 MSL2Q9HCI7 577 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 RAB18Q9NP72 206 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 KLHDC2Q9Y2U9 406 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 A0A1B0GTI1 187 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 hCG_38984A0A1B0GV85 526 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 HLA-DQB1P01920 261 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 CLEC3BP05452 202 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 CELA3AP09093 270 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 OR3A1P47881 315 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 RPL31P62899 125 aaKnown RBP5.94□□□□□ -1.46
SF3B1-201ENST00000335508 CELF2-AS1Q8N7Q2 184 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 OR4S1Q8NGB4 309 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 KLF14Q8TD94 323 aaPredicted RBP5.94□□□□□ -1.46
SF3B1-201ENST00000335508 ADGRG7Q96K78 797 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 C1QTNF5Q9BXJ0 243 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 RTN4RQ9BZR6 473 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 BARX1Q9HBU1 254 aaPredicted RBP5.94□□□□□ -1.46
SF3B1-201ENST00000335508 G6PC2Q9NQR9 355 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 CTNNBIP1Q9NSA3 81 aaPredicted RBP5.94□□□□□ -1.46
SF3B1-201ENST00000335508 CISD1Q9NZ45 108 aaKnown RBP5.94□□□□□ -1.46
SF3B1-201ENST00000335508 THYN1Q9P016 225 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 ATRQ13535 2644 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 SMCO3A2RU48 225 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 K7ENP7 123 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 NUPL2O15504 423 aaKnown RBP5.94□□□□□ -1.46
SF3B1-201ENST00000335508 PPYP01298 95 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 RAB5CP51148 216 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 DOLPP1Q86YN1 238 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 FAM219AQ8IW50 185 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 FBXW5Q969U6 566 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 TSC2P49815 1807 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 TRAV20A0A0B4J274 112 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 C17orf51A8MQB3 221 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 GPR37O15354 613 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 PMP2P02689 132 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 HTR2BP41595 481 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 RAB13P51153 203 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 PRRX1P54821 245 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 MRPS11P82912 194 aaKnown RBP5.94□□□□□ -1.46
SF3B1-201ENST00000335508 FAM169BQ8N8A8 192 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 RNF141Q8WVD5 230 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 BTF3L4Q96K17 158 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 TMEM56Q96MV1 263 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 ZNF436Q9C0F3 470 aaPredicted RBP5.94□□□□□ -1.46
SF3B1-201ENST00000335508 RASL12Q9NYN1 266 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 IL36GQ9NZH8 169 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 LIPGQ9Y5X9 500 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 IGHV3-64DA0A0J9YX35 117 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 TMEM272A0A1B0GTI8 110 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 S100A6P06703 90 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 TMEM33P57088 247 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 FAM3AP98173 230 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 FAM90A1Q86YD7 464 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 HSD17B11Q8NBQ5 300 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 OR10X1Q8NGY0 326 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 OR4S2Q8NH73 311 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 RNF138Q8WVD3 245 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 SNX22Q96L94 193 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 FAAP24Q9BTP7 215 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 PLEKHA3Q9HB20 300 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 TAF9BQ9HBM6 251 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 PRSS50Q9UI38 385 aa5.94□□□□□ -1.46
SF3B1-201ENST00000335508 C17orf112F2Z3M2 114 aa5.93□□□□□ -1.46
SF3B1-201ENST00000335508 CECR9P0C854 216 aa5.93□□□□□ -1.46
SF3B1-201ENST00000335508 SUCLG1P53597 346 aaKnown RBP5.93□□□□□ -1.46
SF3B1-201ENST00000335508 SNRPNP63162 240 aaKnown RBP5.93□□□□□ -1.46
SF3B1-201ENST00000335508 LTC4SQ16873 150 aa5.93□□□□□ -1.46
SF3B1-201ENST00000335508 UNQ6494/PRO21346Q6UXR6 183 aa5.93□□□□□ -1.46
SF3B1-201ENST00000335508 RPEQ96AT9 228 aa5.93□□□□□ -1.46
SF3B1-201ENST00000335508 MIXL1Q9H2W2 232 aa5.93□□□□□ -1.46
SF3B1-201ENST00000335508 PLSCR4Q9NRQ2 329 aa5.93□□□□□ -1.46
SF3B1-201ENST00000335508 M0R1X1 148 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms