RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 TAF15Q92804 592 aaKnown RBP eCLIP12.91□□□□□ -0.34
CLN3-201ENST00000333496 GLS2Q9UI32 602 aa12.91□□□□□ -0.34
CLN3-201ENST00000333496 A0A0G2JK05 382 aa12.91□□□□□ -0.34
CLN3-201ENST00000333496 A0A1W2PPH5 198 aa12.91□□□□□ -0.34
CLN3-201ENST00000333496 CDRT1O95170 752 aa12.91□□□□□ -0.34
CLN3-201ENST00000333496 CPEP16870 476 aa12.91□□□□□ -0.34
CLN3-201ENST00000333496 FSTP19883 344 aa12.91□□□□□ -0.34
CLN3-201ENST00000333496 S100A5P33763 92 aa12.91□□□□□ -0.34
CLN3-201ENST00000333496 SAA4P35542 130 aa12.91□□□□□ -0.34
CLN3-201ENST00000333496 SOX6P35712 828 aa12.91□□□□□ -0.34
CLN3-201ENST00000333496 ZNF93P35789 620 aaPredicted RBP12.91□□□□□ -0.34
CLN3-201ENST00000333496 PTGFRP43088 359 aa12.91□□□□□ -0.34
CLN3-201ENST00000333496 MTNR1BP49286 362 aa12.91□□□□□ -0.34
CLN3-201ENST00000333496 COMPP49747 757 aaPredicted RBP12.91□□□□□ -0.34
CLN3-201ENST00000333496 ZNF45Q02386 682 aa12.91□□□□□ -0.34
CLN3-201ENST00000333496 OR51T1Q8NGJ9 327 aa12.91□□□□□ -0.34
CLN3-201ENST00000333496 OR10K1Q8NGX5 313 aa12.91□□□□□ -0.34
CLN3-201ENST00000333496 GCDHQ92947 438 aaPredicted RBP12.91□□□□□ -0.34
CLN3-201ENST00000333496 CPNE2Q96FN4 548 aaPredicted RBP12.91□□□□□ -0.34
CLN3-201ENST00000333496 DERL3Q96Q80 235 aa12.91□□□□□ -0.34
CLN3-201ENST00000333496 TNFRSF19Q9NS68 423 aa12.91□□□□□ -0.34
CLN3-201ENST00000333496 SLC33A1O00400 549 aaPredicted RBP12.9□□□□□ -0.34
CLN3-201ENST00000333496 MGST3O14880 152 aa12.9□□□□□ -0.34
CLN3-201ENST00000333496 ZNF728P0DKX0 622 aa12.9□□□□□ -0.34
CLN3-201ENST00000333496 HKR1P10072 659 aa12.9□□□□□ -0.34
CLN3-201ENST00000333496 MEF2CQ06413 473 aaPredicted RBP12.9□□□□□ -0.34
CLN3-201ENST00000333496 SCN1BQ07699 218 aa12.9□□□□□ -0.34
CLN3-201ENST00000333496 TPBGQ13641 420 aa12.9□□□□□ -0.34
CLN3-201ENST00000333496 INSL4Q14641 139 aa12.9□□□□□ -0.34
CLN3-201ENST00000333496 LIPKQ5VXJ0 399 aa12.9□□□□□ -0.34
CLN3-201ENST00000333496 GDPGP1Q6ZNW5 385 aa12.9□□□□□ -0.34
CLN3-201ENST00000333496 LDLRAD3Q86YD5 345 aa12.9□□□□□ -0.34
CLN3-201ENST00000333496 C17orf50Q8WW18 174 aa12.9□□□□□ -0.34
CLN3-201ENST00000333496 UFD1Q92890 307 aa12.9□□□□□ -0.34
CLN3-201ENST00000333496 AJUBAQ96IF1 538 aa12.9□□□□□ -0.34
CLN3-201ENST00000333496 CHIAQ9BZP6 476 aa12.9□□□□□ -0.34
CLN3-201ENST00000333496 PPA2Q9H2U2 334 aa12.9□□□□□ -0.34
CLN3-201ENST00000333496 NDUFB11Q9NX14 153 aa12.9□□□□□ -0.34
CLN3-201ENST00000333496 PEX16Q9Y5Y5 336 aa12.9□□□□□ -0.34
CLN3-201ENST00000333496 MEIOCA2RUB1 952 aa12.89□□□□□ -0.35
CLN3-201ENST00000333496 UPK1BO75841 260 aa12.89□□□□□ -0.35
CLN3-201ENST00000333496 IGHV4-59P01825 116 aa12.89□□□□□ -0.35
CLN3-201ENST00000333496 ZNF44P15621 663 aa12.89□□□□□ -0.35
CLN3-201ENST00000333496 ERP29P30040 261 aaKnown RBP12.89□□□□□ -0.35
CLN3-201ENST00000333496 IER3P46695 156 aa12.89□□□□□ -0.35
CLN3-201ENST00000333496 ZNF782Q6ZMW2 699 aaPredicted RBP12.89□□□□□ -0.35
CLN3-201ENST00000333496 TMEM86BQ8N661 226 aa12.89□□□□□ -0.35
CLN3-201ENST00000333496 ZNF714Q96N38 554 aa12.89□□□□□ -0.35
CLN3-201ENST00000333496 FAM210AQ96ND0 272 aa12.89□□□□□ -0.35
CLN3-201ENST00000333496 OR51E2Q9H255 320 aa12.89□□□□□ -0.35
CLN3-201ENST00000333496 ZNRD1Q9P1U0 126 aa12.89□□□□□ -0.35
CLN3-201ENST00000333496 FOXJ3Q9UPW0 622 aa12.89□□□□□ -0.35
CLN3-201ENST00000333496 SF3B6Q9Y3B4 125 aaKnown RBP12.89□□□□□ -0.35
CLN3-201ENST00000333496 LINC00312Q9Y6C7 94 aa12.89□□□□□ -0.35
CLN3-201ENST00000333496 LOC100506127A0A0U1RQW1 187 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 hCG_1809904A0A1W2PP81 198 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 A0A1W2PPE2 198 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 A0A1W2PR64 198 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 A0A1W2PRV1 198 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 hADV38S2A0JD32 116 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 FBP1P09467 338 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 ETV6P41212 452 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 AESQ08117 197 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 RSU1Q15404 277 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 PIGYQ3MUY2 71 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 UNQ9370/PRO34162Q6UXP9 181 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 LYPD6Q86Y78 171 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 CHST4Q8NCG5 386 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 PPP1R35Q8TAP8 253 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 SSMEM1Q8WWF3 244 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 COQ2Q96H96 371 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 C6orf62Q9GZU0 229 aaPredicted RBP12.88□□□□□ -0.35
CLN3-201ENST00000333496 HEXA-AS1Q9H8Q6 139 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 IL36GQ9NZH8 169 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 ZNF581Q9P0T4 197 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 CKLFQ9UBR5 152 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 ING4Q9UNL4 249 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 FAM96BQ9Y3D0 163 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 POMT1Q9Y6A1 747 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 BOLA2-SMG1P6H3BVE0 249 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 DEGS1O15121 323 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 HTR3BO95264 441 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 RBP4P02753 201 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 MAS1P04201 325 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 CSN2P05814 226 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 IGHV1-8P0DP01 117 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 PSMA1P25786 263 aaKnown RBP12.88□□□□□ -0.35
CLN3-201ENST00000333496 TGFBR1P36897 503 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 GLIPR1P48060 266 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 P2RX3P56373 397 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 AWAT1Q58HT5 328 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 FAM27D1Q5T7N8 215 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 C12orf54Q6X4T0 127 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 NEURL2Q9BR09 285 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 CHCHD6Q9BRQ6 235 aa12.88□□□□□ -0.35
CLN3-201ENST00000333496 TRAV24A0A0B4J272 114 aa12.87□□□□□ -0.35
CLN3-201ENST00000333496 A0A1W2PP11 408 aa12.87□□□□□ -0.35
CLN3-201ENST00000333496 FAM181BA6NEQ2 426 aa12.87□□□□□ -0.35
CLN3-201ENST00000333496 SC5DO75845 299 aa12.87□□□□□ -0.35
CLN3-201ENST00000333496 COX7A1P24310 79 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms