RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 A0A1W2PRV1 198 aa13.03□□□□□ -0.32
CCDC28A-201ENST00000332797 ODAMA1E959 279 aa13.03□□□□□ -0.32
CCDC28A-201ENST00000332797 ZNF728P0DKX0 622 aa13.03□□□□□ -0.32
CCDC28A-201ENST00000332797 PRTN3P24158 256 aa13.03□□□□□ -0.32
CCDC28A-201ENST00000332797 DLX6P56179 175 aa13.03□□□□□ -0.32
CCDC28A-201ENST00000332797 UNC119Q13432 240 aa13.03□□□□□ -0.32
CCDC28A-201ENST00000332797 BRICD5Q6PL45 260 aa13.03□□□□□ -0.32
CCDC28A-201ENST00000332797 BCL6BQ8N143 479 aaPredicted RBP13.03□□□□□ -0.32
CCDC28A-201ENST00000332797 OR51D1Q8NGF3 324 aa13.03□□□□□ -0.32
CCDC28A-201ENST00000332797 PLPPR1Q8TBJ4 325 aa13.03□□□□□ -0.32
CCDC28A-201ENST00000332797 YIPF6Q96EC8 236 aa13.03□□□□□ -0.32
CCDC28A-201ENST00000332797 RNF167Q9H6Y7 350 aa13.03□□□□□ -0.32
CCDC28A-201ENST00000332797 SPACA1Q9HBV2 294 aa13.03□□□□□ -0.32
CCDC28A-201ENST00000332797 STEAP1Q9UHE8 339 aa13.03□□□□□ -0.32
CCDC28A-201ENST00000332797 SOX21Q9Y651 276 aaPredicted RBP13.03□□□□□ -0.32
CCDC28A-201ENST00000332797 IGHV1-69DA0A0B4J2H0 117 aa13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 FAM90A10PA6NDY2 464 aa13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 FAM90A18PA6NE21 464 aa13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 FAM90A16PA6NEW6 464 aa13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 FAM90A20PA6NIJ5 464 aa13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 FAM90A8PA6NJQ4 464 aa13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 FAM90A7PA6NKC0 464 aa13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 FAM90A22PA8MWA6 464 aa13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 TMEM14DPA8MWL7 114 aa13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 FAM90A12PA8MX19 464 aa13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 FAM90A5PA8MXJ8 464 aa13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 FAM90A23PA8MXZ1 464 aa13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 RNASEK-C17orf49H0YIS7 233 aa13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 IGHV1-69P01742 117 aa13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 FAM90A15PP0C7V4 464 aa13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 FAM90A13PP0C7W8 464 aa13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 FAM90A14PP0C7W9 464 aa13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 FAM90A24PP0C7X0 464 aa13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 KCNJ3P48549 501 aa13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 ERVFRD-1P60508 538 aa13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 RPS27AP62979 156 aaKnown RBP13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 QRFPP83859 136 aa13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 TIMM50Q3ZCQ8 353 aa13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 NCR3LG1Q68D85 454 aa13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 RAB12Q6IQ22 244 aa13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 ZNF782Q6ZMW2 699 aaPredicted RBP13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 C11orf42Q8N5U0 333 aa13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 TNFRSF14Q92956 283 aa13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 FAM3DQ96BQ1 224 aa13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 CENPOQ9BU64 300 aa13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 BARHL1Q9BZE3 327 aa13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 UNKLQ9H9P5 680 aaKnown RBP13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 RCC2Q9P258 522 aaKnown RBP13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 KIF25Q9UIL4 384 aa13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 UBE2J1Q9Y385 318 aaPredicted RBP13.02□□□□□ -0.33
CCDC28A-201ENST00000332797 MEIKINA0A087WXM9 373 aa13.01□□□□□ -0.33
CCDC28A-201ENST00000332797 A0A1W2PRD5 423 aa13.01□□□□□ -0.33
CCDC28A-201ENST00000332797 A0A1W2PRF3 423 aa13.01□□□□□ -0.33
CCDC28A-201ENST00000332797 A0A1W2PRM7 423 aa13.01□□□□□ -0.33
CCDC28A-201ENST00000332797 IFITM5A6NNB3 132 aa13.01□□□□□ -0.33
CCDC28A-201ENST00000332797 C17orf98A8MV24 154 aa13.01□□□□□ -0.33
CCDC28A-201ENST00000332797 GLP1RP43220 463 aa13.01□□□□□ -0.33
CCDC28A-201ENST00000332797 RANBP1P43487 201 aa13.01□□□□□ -0.33
CCDC28A-201ENST00000332797 GUCA2AQ02747 115 aa13.01□□□□□ -0.33
CCDC28A-201ENST00000332797 NKAPLQ5M9Q1 402 aa13.01□□□□□ -0.33
CCDC28A-201ENST00000332797 RSBN1Q5VWQ0 802 aaPredicted RBP13.01□□□□□ -0.33
CCDC28A-201ENST00000332797 OR2W3Q7Z3T1 314 aa13.01□□□□□ -0.33
CCDC28A-201ENST00000332797 NR2C2APQ86WQ0 139 aa13.01□□□□□ -0.33
CCDC28A-201ENST00000332797 ZNF418Q8TF45 676 aaPredicted RBP13.01□□□□□ -0.33
CCDC28A-201ENST00000332797 NICN1Q9BSH3 213 aa13.01□□□□□ -0.33
CCDC28A-201ENST00000332797 SUCNR1Q9BXA5 334 aa13.01□□□□□ -0.33
CCDC28A-201ENST00000332797 MRPS26Q9BYN8 205 aaKnown RBP13.01□□□□□ -0.33
CCDC28A-201ENST00000332797 PEX16Q9Y5Y5 336 aa13.01□□□□□ -0.33
CCDC28A-201ENST00000332797 DSCAML1Q8TD84 2053 aa13.01□□□□□ -0.33
CCDC28A-201ENST00000332797 MCRIP1C9JLW8 97 aa13□□□□□ -0.33
CCDC28A-201ENST00000332797 AIPO00170 330 aa13□□□□□ -0.33
CCDC28A-201ENST00000332797 TCF21O43680 179 aa13□□□□□ -0.33
CCDC28A-201ENST00000332797 AIREO43918 545 aa13□□□□□ -0.33
CCDC28A-201ENST00000332797 CLPXO76031 633 aa13□□□□□ -0.33
CCDC28A-201ENST00000332797 RBP4P02753 201 aa13□□□□□ -0.33
CCDC28A-201ENST00000332797 FUT3P21217 361 aa13□□□□□ -0.33
CCDC28A-201ENST00000332797 COX7A1P24310 79 aa13□□□□□ -0.33
CCDC28A-201ENST00000332797 SDC2P34741 201 aa13□□□□□ -0.33
CCDC28A-201ENST00000332797 BPIFB3P59826 476 aa13□□□□□ -0.33
CCDC28A-201ENST00000332797 MXD1Q05195 221 aa13□□□□□ -0.33
CCDC28A-201ENST00000332797 C2orf76Q3KRA6 126 aa13□□□□□ -0.33
CCDC28A-201ENST00000332797 SIGIRRQ6IA17 410 aa13□□□□□ -0.33
CCDC28A-201ENST00000332797 C9orf139Q6ZV77 190 aa13□□□□□ -0.33
CCDC28A-201ENST00000332797 TPRA1Q86W33 373 aa13□□□□□ -0.33
CCDC28A-201ENST00000332797 PNKDQ8N490 385 aa13□□□□□ -0.33
CCDC28A-201ENST00000332797 CORO2AQ92828 525 aa13□□□□□ -0.33
CCDC28A-201ENST00000332797 GAL3ST2Q9H3Q3 398 aa13□□□□□ -0.33
CCDC28A-201ENST00000332797 OR6C3Q9NZP0 311 aa13□□□□□ -0.33
CCDC28A-201ENST00000332797 A0A0B4J203 849 aa12.99□□□□□ -0.33
CCDC28A-201ENST00000332797 TMEM30CPA0ZSE6 113 aa12.99□□□□□ -0.33
CCDC28A-201ENST00000332797 NOTOA8MTQ0 251 aa12.99□□□□□ -0.33
CCDC28A-201ENST00000332797 PDCD6O75340 191 aa12.99□□□□□ -0.33
CCDC28A-201ENST00000332797 CLEC2LP0C7M8 214 aa12.99□□□□□ -0.33
CCDC28A-201ENST00000332797 IGHV1-8P0DP01 117 aa12.99□□□□□ -0.33
CCDC28A-201ENST00000332797 SLC2A2P11168 524 aaPredicted RBP12.99□□□□□ -0.33
CCDC28A-201ENST00000332797 LSM3P62310 102 aaKnown RBP12.99□□□□□ -0.33
CCDC28A-201ENST00000332797 SRSF2Q01130 221 aaKnown RBP12.99□□□□□ -0.33
CCDC28A-201ENST00000332797 PAX5Q02548 391 aa12.99□□□□□ -0.33
CCDC28A-201ENST00000332797 RBM39Q14498 530 aaKnown RBP12.99□□□□□ -0.33
CCDC28A-201ENST00000332797 HCP5Q6MZN7 132 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms