RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 SRSF3P84103 164 aaKnown RBP12.68□□□□□ -0.38
CLCNKA-201ENST00000331433 ZNF818PQ6ZRF7 136 aa12.68□□□□□ -0.38
CLCNKA-201ENST00000331433 DPPA2Q7Z7J5 298 aa12.68□□□□□ -0.38
CLCNKA-201ENST00000331433 ZNF573Q86YE8 665 aa12.68□□□□□ -0.38
CLCNKA-201ENST00000331433 ERGIC1Q969X5 290 aa12.68□□□□□ -0.38
CLCNKA-201ENST00000331433 LRRC46Q96FV0 321 aa12.68□□□□□ -0.38
CLCNKA-201ENST00000331433 GMPPAQ96IJ6 420 aaPredicted RBP12.68□□□□□ -0.38
CLCNKA-201ENST00000331433 GP6Q9HCN6 339 aa12.68□□□□□ -0.38
CLCNKA-201ENST00000331433 LPAR3Q9UBY5 353 aa12.68□□□□□ -0.38
CLCNKA-201ENST00000331433 LHX6Q9UPM6 363 aa12.68□□□□□ -0.38
CLCNKA-201ENST00000331433 ZNF175Q9Y473 711 aa12.68□□□□□ -0.38
CLCNKA-201ENST00000331433 TRAV24A0A0B4J272 114 aa12.68□□□□□ -0.38
CLCNKA-201ENST00000331433 IGHV3-64DA0A0J9YX35 117 aa12.68□□□□□ -0.38
CLCNKA-201ENST00000331433 RAB19A4D1S5 217 aa12.68□□□□□ -0.38
CLCNKA-201ENST00000331433 FBXO24O75426 580 aa12.68□□□□□ -0.38
CLCNKA-201ENST00000331433 IGHV1-2P23083 117 aa12.68□□□□□ -0.38
CLCNKA-201ENST00000331433 TBC1D28Q2M2D7 210 aa12.68□□□□□ -0.38
CLCNKA-201ENST00000331433 MST1LQ2TV78 715 aa12.68□□□□□ -0.38
CLCNKA-201ENST00000331433 TMEM268Q5VZI3 342 aa12.68□□□□□ -0.38
CLCNKA-201ENST00000331433 ARL11Q969Q4 196 aa12.68□□□□□ -0.38
CLCNKA-201ENST00000331433 OR5B21A6NL26 309 aa12.67□□□□□ -0.38
CLCNKA-201ENST00000331433 GALR2O43603 387 aaPredicted RBP12.67□□□□□ -0.38
CLCNKA-201ENST00000331433 ZNF14P17017 642 aaPredicted RBP12.67□□□□□ -0.38
CLCNKA-201ENST00000331433 KCNJ3P48549 501 aa12.67□□□□□ -0.38
CLCNKA-201ENST00000331433 FBXW12Q6X9E4 464 aa12.67□□□□□ -0.38
CLCNKA-201ENST00000331433 TBC1D26Q86UD7 250 aa12.67□□□□□ -0.38
CLCNKA-201ENST00000331433 FAM58AQ8N1B3 248 aa12.67□□□□□ -0.38
CLCNKA-201ENST00000331433 GAPTQ8N292 157 aa12.67□□□□□ -0.38
CLCNKA-201ENST00000331433 MRPL30Q8TCC3 161 aaKnown RBP12.67□□□□□ -0.38
CLCNKA-201ENST00000331433 TRIB1Q96RU8 372 aa12.67□□□□□ -0.38
CLCNKA-201ENST00000331433 OR2J1Q9GZK6 312 aa12.67□□□□□ -0.38
CLCNKA-201ENST00000331433 OR51I2Q9H344 312 aa12.67□□□□□ -0.38
CLCNKA-201ENST00000331433 ASCL3Q9NQ33 180 aa12.67□□□□□ -0.38
CLCNKA-201ENST00000331433 FBXO9Q9UK97 447 aaPredicted RBP12.67□□□□□ -0.38
CLCNKA-201ENST00000331433 TRDCB7Z8K6 153 aa12.67□□□□□ -0.38
CLCNKA-201ENST00000331433 E5RGE8 158 aa12.67□□□□□ -0.38
CLCNKA-201ENST00000331433 PRSS44E7EML9 344 aa12.67□□□□□ -0.38
CLCNKA-201ENST00000331433 ABCD4O14678 606 aa12.67□□□□□ -0.38
CLCNKA-201ENST00000331433 CD82P27701 267 aa12.67□□□□□ -0.38
CLCNKA-201ENST00000331433 IL24Q13007 206 aa12.67□□□□□ -0.38
CLCNKA-201ENST00000331433 UQCC3Q6UW78 93 aa12.67□□□□□ -0.38
CLCNKA-201ENST00000331433 OR4A4PQ8NGN8 299 aa12.67□□□□□ -0.38
CLCNKA-201ENST00000331433 USB1Q9BQ65 265 aaKnown RBP12.67□□□□□ -0.38
CLCNKA-201ENST00000331433 HRH4Q9H3N8 390 aa12.67□□□□□ -0.38
CLCNKA-201ENST00000331433 TMEM231Q9H6L2 316 aa12.67□□□□□ -0.38
CLCNKA-201ENST00000331433 GLS2Q9UI32 602 aa12.67□□□□□ -0.38
CLCNKA-201ENST00000331433 NSG2Q9Y328 171 aa12.67□□□□□ -0.38
CLCNKA-201ENST00000331433 ATP23Q9Y6H3 246 aa12.67□□□□□ -0.38
CLCNKA-201ENST00000331433 KIR2DS1A0A191URI9 304 aa12.66□□□□□ -0.38
CLCNKA-201ENST00000331433 HSD17B6O14756 317 aa12.66□□□□□ -0.38
CLCNKA-201ENST00000331433 TPD52L2O43399 206 aaKnown RBP12.66□□□□□ -0.38
CLCNKA-201ENST00000331433 SMPD2O60906 423 aa12.66□□□□□ -0.38
CLCNKA-201ENST00000331433 KIR2DS4P43632 304 aa12.66□□□□□ -0.38
CLCNKA-201ENST00000331433 KIR2DS1Q14954 304 aa12.66□□□□□ -0.38
CLCNKA-201ENST00000331433 ALKBH6Q3KRA9 238 aa12.66□□□□□ -0.38
CLCNKA-201ENST00000331433 LDLRAD3Q86YD5 345 aa12.66□□□□□ -0.38
CLCNKA-201ENST00000331433 ZNF565Q8N9K5 539 aa12.66□□□□□ -0.38
CLCNKA-201ENST00000331433 TMEM222Q9H0R3 208 aa12.66□□□□□ -0.38
CLCNKA-201ENST00000331433 PLK3Q9H4B4 646 aa12.66□□□□□ -0.38
CLCNKA-201ENST00000331433 PLA2G2EQ9NZK7 142 aa12.66□□□□□ -0.38
CLCNKA-201ENST00000331433 CLCF1Q9UBD9 225 aa12.66□□□□□ -0.38
CLCNKA-201ENST00000331433 ZDHHC8Q9ULC8 765 aa12.66□□□□□ -0.38
CLCNKA-201ENST00000331433 TMEM218A2RU14 115 aa12.66□□□□□ -0.38
CLCNKA-201ENST00000331433 CDK2AP1O14519 115 aa12.66□□□□□ -0.38
CLCNKA-201ENST00000331433 SLC34A2O95436 690 aa12.66□□□□□ -0.38
CLCNKA-201ENST00000331433 ADCYAP1P18509 176 aa12.66□□□□□ -0.38
CLCNKA-201ENST00000331433 LPAR6P43657 344 aa12.66□□□□□ -0.38
CLCNKA-201ENST00000331433 UBE2NP61088 152 aaKnown RBP12.66□□□□□ -0.38
CLCNKA-201ENST00000331433 EIF5AP63241 154 aaKnown RBP12.66□□□□□ -0.38
CLCNKA-201ENST00000331433 SRSF7Q16629 238 aaKnown RBP eCLIP12.66□□□□□ -0.38
CLCNKA-201ENST00000331433 WDR86Q86TI4 376 aa12.66□□□□□ -0.38
CLCNKA-201ENST00000331433 PLEKHA2Q9HB19 425 aa12.66□□□□□ -0.38
CLCNKA-201ENST00000331433 SPACA1Q9HBV2 294 aa12.66□□□□□ -0.38
CLCNKA-201ENST00000331433 CCL28Q9NRJ3 127 aa12.66□□□□□ -0.38
CLCNKA-201ENST00000331433 UBE2J1Q9Y385 318 aaPredicted RBP12.66□□□□□ -0.38
CLCNKA-201ENST00000331433 ZNF318Q5VUA4 2279 aa12.66□□□□□ -0.38
CLCNKA-201ENST00000331433 NKX2-6A6NCS4 301 aa12.65□□□□□ -0.38
CLCNKA-201ENST00000331433 MED6O75586 246 aa12.65□□□□□ -0.38
CLCNKA-201ENST00000331433 TUSC2O75896 110 aa12.65□□□□□ -0.38
CLCNKA-201ENST00000331433 ZNF44P15621 663 aa12.65□□□□□ -0.38
CLCNKA-201ENST00000331433 PPP1CBP62140 327 aa12.65□□□□□ -0.38
CLCNKA-201ENST00000331433 TAGLNQ01995 201 aaKnown RBP12.65□□□□□ -0.38
CLCNKA-201ENST00000331433 ZNF273Q14593 569 aa12.65□□□□□ -0.38
CLCNKA-201ENST00000331433 CNEP1R1Q8N9A8 125 aa12.65□□□□□ -0.38
CLCNKA-201ENST00000331433 WNT2BQ93097 391 aa12.65□□□□□ -0.38
CLCNKA-201ENST00000331433 DLL3Q9NYJ7 618 aa12.65□□□□□ -0.38
CLCNKA-201ENST00000331433 TMED3Q9Y3Q3 217 aa12.65□□□□□ -0.38
CLCNKA-201ENST00000331433 GTF3C1Q12789 2109 aa12.65□□□□□ -0.38
CLCNKA-201ENST00000331433 TRAV39A0A0B4J263 110 aa12.65□□□□□ -0.38
CLCNKA-201ENST00000331433 GPR31O00270 319 aa12.65□□□□□ -0.38
CLCNKA-201ENST00000331433 TNFSF12O43508 249 aa12.65□□□□□ -0.38
CLCNKA-201ENST00000331433 JTBO76095 146 aa12.65□□□□□ -0.38
CLCNKA-201ENST00000331433 IGHG3P01860 377 aa12.65□□□□□ -0.38
CLCNKA-201ENST00000331433 LINC00596Q86U02 117 aa12.65□□□□□ -0.38
CLCNKA-201ENST00000331433 FAM185AQ8N0U4 392 aa12.65□□□□□ -0.38
CLCNKA-201ENST00000331433 SMIM8Q96KF7 97 aa12.65□□□□□ -0.38
CLCNKA-201ENST00000331433 PKIBQ9C010 78 aa12.65□□□□□ -0.38
CLCNKA-201ENST00000331433 CDH20Q9HBT6 801 aa12.65□□□□□ -0.38
CLCNKA-201ENST00000331433 MMP26Q9NRE1 261 aa12.65□□□□□ -0.38
CLCNKA-201ENST00000331433 RCL1Q9Y2P8 373 aaKnown RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms