RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 CD1AP06126 327 aa10.15□□□□□ -0.79
VPS39-201ENST00000318006 PGA4P0DJD7 388 aa10.15□□□□□ -0.79
VPS39-201ENST00000318006 PGA5P0DJD9 388 aa10.15□□□□□ -0.79
VPS39-201ENST00000318006 SUCLG1P53597 346 aaKnown RBP10.15□□□□□ -0.79
VPS39-201ENST00000318006 TSPO2Q5TGU0 170 aa10.15□□□□□ -0.79
VPS39-201ENST00000318006 ETV3LQ6ZN32 361 aa10.15□□□□□ -0.79
VPS39-201ENST00000318006 ZNF600Q6ZNG1 722 aa10.15□□□□□ -0.79
VPS39-201ENST00000318006 FAM181AQ8N9Y4 354 aa10.15□□□□□ -0.79
VPS39-201ENST00000318006 BCL2L2Q92843 193 aaPredicted RBP10.15□□□□□ -0.79
VPS39-201ENST00000318006 ACY3Q96HD9 319 aa10.15□□□□□ -0.79
VPS39-201ENST00000318006 IER2Q9BTL4 223 aa10.15□□□□□ -0.79
VPS39-201ENST00000318006 DDA1Q9BW61 102 aa10.15□□□□□ -0.79
VPS39-201ENST00000318006 SIRT4Q9Y6E7 314 aaPredicted RBP10.15□□□□□ -0.79
VPS39-201ENST00000318006 IGHV3-64DA0A0J9YX35 117 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 LINC01387J3KSC0 135 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 CYR61O00622 381 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 MPLP40238 635 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 ISXQ2M1V0 245 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 CD200R1LQ6Q8B3 271 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 LRFN3Q9BTN0 628 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 OCIAD1Q9NX40 245 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 P4HTMQ9NXG6 502 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 PARP14Q460N5 1801 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 FAM87AP0C7U9 286 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 BMP5P22003 454 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 HOXA6P31267 233 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 PRDX4Q13162 271 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 CYB561D1Q8N8Q1 229 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 OR5D13Q8NGL4 314 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 GNRHR2Q96P88 292 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 GGACTQ9BVM4 153 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 SLC2A8Q9NY64 477 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 IL2RAP01589 272 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 EFNB2P52799 333 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 TBC1D26Q86UD7 250 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 OR1P1Q8NH06 330 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 MRPL30Q8TCC3 161 aaKnown RBP10.14□□□□□ -0.79
VPS39-201ENST00000318006 APOBEC3DQ96AK3 386 aaPredicted RBP10.14□□□□□ -0.79
VPS39-201ENST00000318006 GPA33Q99795 319 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 FOXB1Q99853 325 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 GPR61Q9BZJ8 451 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 DOK5Q9P104 306 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 PSME4Q14997 1843 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 PDE6DO43924 150 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 RECKO95980 971 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 IL9P15248 144 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 RPS4Y1P22090 263 aaKnown RBP10.14□□□□□ -0.79
VPS39-201ENST00000318006 FCARP24071 287 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 EIF3IQ13347 325 aaKnown RBP10.14□□□□□ -0.79
VPS39-201ENST00000318006 WIPI1Q5MNZ9 446 aaPredicted RBP10.14□□□□□ -0.79
VPS39-201ENST00000318006 C16orf47Q6ZP98 133 aaPredicted RBP10.14□□□□□ -0.79
VPS39-201ENST00000318006 C16orf82Q7Z2V1 217 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 SLC35E3Q7Z769 313 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 HIST1H2BAQ96A08 127 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 MOGAT1Q96PD6 335 aa10.14□□□□□ -0.79
VPS39-201ENST00000318006 SNURFLB1AK76 121 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 STAG3L2P0CL84 134 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 RPS23P62266 143 aaKnown RBP10.13□□□□□ -0.79
VPS39-201ENST00000318006 H1FOOQ8IZA3 346 aaPredicted RBP10.13□□□□□ -0.79
VPS39-201ENST00000318006 MAP1LC3CQ9BXW4 147 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 HES4Q9HCC6 221 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 SLC22A20A6NK97 555 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 DEDDO75618 318 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 F2RP25116 425 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 IGFBP7Q16270 282 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 Q8IYB0 196 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 WNT2BQ93097 391 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 WDR13Q9H1Z4 485 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 SLC52A3Q9NQ40 469 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 GSN-AS1Q9NRJ2 163 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 DECR2Q9NUI1 292 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 OR2J3O76001 311 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 BCL2P10415 239 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 MDKP21741 143 aaPredicted RBP10.13□□□□□ -0.79
VPS39-201ENST00000318006 CEACAM6P40199 344 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 LAIR2Q6ISS4 152 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 PTX4Q96A99 478 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 SRD5A3Q9H8P0 318 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 TMEM167BQ9NRX6 74 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 FLRT3Q9NZU0 649 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 PROCRQ9UNN8 238 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 RNF24Q9Y225 148 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 STARD10Q9Y365 291 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 H3BMH7 237 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 PRRG2O14669 202 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 NEURL1O76050 574 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 NTN1O95631 604 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 SLC25A5P05141 298 aaKnown RBP10.13□□□□□ -0.79
VPS39-201ENST00000318006 ACAA2P42765 397 aaKnown RBP10.13□□□□□ -0.79
VPS39-201ENST00000318006 OR3A1P47881 315 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 RAB7AP51149 207 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 GNG3P63215 75 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 LSM11P83369 360 aaKnown RBP eCLIP10.13□□□□□ -0.797e-7■■□□□ 12.4
VPS39-201ENST00000318006 OR4A47Q6IF82 309 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 LYZL2Q7Z4W2 148 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 BPIFA4PQ86YQ2 179 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 OR10AC1Q8NH08 325 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 ASB5Q8WWX0 329 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 LPAR5Q9H1C0 372 aa10.13□□□□□ -0.79
VPS39-201ENST00000318006 SH2D2AQ9NP31 389 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms