RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 HILPDAQ9Y5L2 63 aa13.17□□□□□ -0.3
LSM1-201ENST00000311351 MEGF8Q7Z7M0 2845 aa13.16□□□□□ -0.3
LSM1-201ENST00000311351 A0A1W2PP11 408 aa13.16□□□□□ -0.3
LSM1-201ENST00000311351 VGLL3A8MV65 326 aa13.16□□□□□ -0.3
LSM1-201ENST00000311351 GLP1RP43220 463 aa13.16□□□□□ -0.3
LSM1-201ENST00000311351 WNT4P56705 351 aa13.16□□□□□ -0.3
LSM1-201ENST00000311351 TAS2R43P59537 309 aa13.16□□□□□ -0.3
LSM1-201ENST00000311351 IL13RA2Q14627 380 aa13.16□□□□□ -0.3
LSM1-201ENST00000311351 CCBE1Q6UXH8 406 aaPredicted RBP13.16□□□□□ -0.3
LSM1-201ENST00000311351 HEPN1Q6WQI6 88 aa13.16□□□□□ -0.3
LSM1-201ENST00000311351 TMEM219Q86XT9 240 aa13.16□□□□□ -0.3
LSM1-201ENST00000311351 OR4P4Q8NGL7 312 aa13.16□□□□□ -0.3
LSM1-201ENST00000311351 OR4C13Q8NGP0 309 aa13.16□□□□□ -0.3
LSM1-201ENST00000311351 NDNFQ8TB73 568 aa13.16□□□□□ -0.3
LSM1-201ENST00000311351 PLPPR1Q8TBJ4 325 aa13.16□□□□□ -0.3
LSM1-201ENST00000311351 CORO2AQ92828 525 aa13.16□□□□□ -0.3
LSM1-201ENST00000311351 MALSU1Q96EH3 234 aa13.16□□□□□ -0.3
LSM1-201ENST00000311351 ZNF286AQ9HBT8 521 aa13.16□□□□□ -0.3
LSM1-201ENST00000311351 TAS2R3Q9NYW6 316 aa13.16□□□□□ -0.3
LSM1-201ENST00000311351 KIF25Q9UIL4 384 aa13.16□□□□□ -0.3
LSM1-201ENST00000311351 ING4Q9UNL4 249 aa13.16□□□□□ -0.3
LSM1-201ENST00000311351 TRBV5-7A0A0A0MS05 114 aa13.15□□□□□ -0.3
LSM1-201ENST00000311351 CELP19835 753 aa13.15□□□□□ -0.3
LSM1-201ENST00000311351 FSTP19883 344 aa13.15□□□□□ -0.3
LSM1-201ENST00000311351 SERPINA2P20848 420 aa13.15□□□□□ -0.3
LSM1-201ENST00000311351 GABRA5P31644 462 aa13.15□□□□□ -0.3
LSM1-201ENST00000311351 UTF1Q5T230 341 aa13.15□□□□□ -0.3
LSM1-201ENST00000311351 MINOS1Q5TGZ0 78 aa13.15□□□□□ -0.3
LSM1-201ENST00000311351 TREML4Q6UXN2 200 aa13.15□□□□□ -0.3
LSM1-201ENST00000311351 Q8NFD4 153 aa13.15□□□□□ -0.3
LSM1-201ENST00000311351 OR13A1Q8NGR1 328 aa13.15□□□□□ -0.3
LSM1-201ENST00000311351 SGCDQ92629 289 aa13.15□□□□□ -0.3
LSM1-201ENST00000311351 METTL9Q9H1A3 318 aa13.15□□□□□ -0.3
LSM1-201ENST00000311351 ABCB10Q9NRK6 738 aa13.15□□□□□ -0.3
LSM1-201ENST00000311351 IL36GQ9NZH8 169 aa13.15□□□□□ -0.3
LSM1-201ENST00000311351 CKLFQ9UBR5 152 aa13.15□□□□□ -0.3
LSM1-201ENST00000311351 MINOS1-NBL1R4GNA1 71 aa13.15□□□□□ -0.3
LSM1-201ENST00000311351 A6NDX4 124 aa13.14□□□□□ -0.31
LSM1-201ENST00000311351 HSPA13P48723 471 aa13.14□□□□□ -0.31
LSM1-201ENST00000311351 RBM11P57052 281 aaKnown RBP13.14□□□□□ -0.31
LSM1-201ENST00000311351 C17orf58Q2M2W7 97 aa13.14□□□□□ -0.31
LSM1-201ENST00000311351 RSBN1Q5VWQ0 802 aaPredicted RBP13.14□□□□□ -0.31
LSM1-201ENST00000311351 HIST2H2BDQ6DRA6 164 aa13.14□□□□□ -0.31
LSM1-201ENST00000311351 LIAT1Q6ZQX7 453 aa13.14□□□□□ -0.31
LSM1-201ENST00000311351 ABHD12Q8N2K0 398 aa13.14□□□□□ -0.31
LSM1-201ENST00000311351 OSR2Q8N2R0 312 aa13.14□□□□□ -0.31
LSM1-201ENST00000311351 NANOGP1Q8N7R0 232 aa13.14□□□□□ -0.31
LSM1-201ENST00000311351 DERL3Q96Q80 235 aa13.14□□□□□ -0.31
LSM1-201ENST00000311351 TCF7L1Q9HCS4 588 aa13.14□□□□□ -0.31
LSM1-201ENST00000311351 RAB18Q9NP72 206 aa13.14□□□□□ -0.31
LSM1-201ENST00000311351 PAK1IP1Q9NWT1 392 aaPredicted RBP13.14□□□□□ -0.31
LSM1-201ENST00000311351 FBLN5Q9UBX5 448 aa13.14□□□□□ -0.31
LSM1-201ENST00000311351 ST3GAL6Q9Y274 331 aa13.14□□□□□ -0.31
LSM1-201ENST00000311351 TET2Q6N021 2002 aaPredicted RBP13.13□□□□□ -0.31
LSM1-201ENST00000311351 MEIKINA0A087WXM9 373 aa13.13□□□□□ -0.31
LSM1-201ENST00000311351 TRAV39A0A0B4J263 110 aa13.13□□□□□ -0.31
LSM1-201ENST00000311351 ZNF729A6NN14 1252 aaPredicted RBP13.13□□□□□ -0.31
LSM1-201ENST00000311351 F2RL2O00254 374 aa13.13□□□□□ -0.31
LSM1-201ENST00000311351 GEMIN2O14893 280 aaKnown RBP13.13□□□□□ -0.31
LSM1-201ENST00000311351 PIN1P1O15428 100 aa13.13□□□□□ -0.31
LSM1-201ENST00000311351 GPX5O75715 221 aa13.13□□□□□ -0.31
LSM1-201ENST00000311351 OR7C1O76099 320 aaPredicted RBP13.13□□□□□ -0.31
LSM1-201ENST00000311351 CSTBP04080 98 aaKnown RBP13.13□□□□□ -0.31
LSM1-201ENST00000311351 CDK1P06493 297 aa13.13□□□□□ -0.31
LSM1-201ENST00000311351 HTR1DP28221 377 aa13.13□□□□□ -0.31
LSM1-201ENST00000311351 CD34P28906 385 aa13.13□□□□□ -0.31
LSM1-201ENST00000311351 EFNB2P52799 333 aa13.13□□□□□ -0.31
LSM1-201ENST00000311351 INSL4Q14641 139 aa13.13□□□□□ -0.31
LSM1-201ENST00000311351 SLC22A6Q4U2R8 563 aa13.13□□□□□ -0.31
LSM1-201ENST00000311351 NHLRC3Q5JS37 347 aa13.13□□□□□ -0.31
LSM1-201ENST00000311351 C6orf141Q5SZD1 244 aa13.13□□□□□ -0.31
LSM1-201ENST00000311351 OR52W1Q6IF63 320 aa13.13□□□□□ -0.31
LSM1-201ENST00000311351 JAGN1Q8N5M9 183 aa13.13□□□□□ -0.31
LSM1-201ENST00000311351 SUMF2Q8NBJ7 301 aa13.13□□□□□ -0.31
LSM1-201ENST00000311351 OR4D6Q8NGJ1 314 aa13.13□□□□□ -0.31
LSM1-201ENST00000311351 MUL1Q969V5 352 aa13.13□□□□□ -0.31
LSM1-201ENST00000311351 KIRREL1Q96J84 757 aa13.13□□□□□ -0.31
LSM1-201ENST00000311351 S100A13Q99584 98 aa13.13□□□□□ -0.31
LSM1-201ENST00000311351 DPCDQ9BVM2 203 aaPredicted RBP13.13□□□□□ -0.31
LSM1-201ENST00000311351 CDCA4Q9BXL8 241 aa13.13□□□□□ -0.31
LSM1-201ENST00000311351 NPFFR1Q9GZQ6 430 aa13.13□□□□□ -0.31
LSM1-201ENST00000311351 RANBP3Q9H6Z4 567 aaPredicted RBP13.13□□□□□ -0.31
LSM1-201ENST00000311351 CALYQ9NYX4 217 aa13.13□□□□□ -0.31
LSM1-201ENST00000311351 OR6C3Q9NZP0 311 aa13.13□□□□□ -0.31
LSM1-201ENST00000311351 ERGIC3Q9Y282 383 aa13.13□□□□□ -0.31
LSM1-201ENST00000311351 KBTBD11-OT1A0A1B0GTJ5 212 aa13.12□□□□□ -0.31
LSM1-201ENST00000311351 PTGES3LE9PB15 166 aa13.12□□□□□ -0.31
LSM1-201ENST00000311351 IGLV1-47P01700 117 aa13.12□□□□□ -0.31
LSM1-201ENST00000311351 MAS1P04201 325 aa13.12□□□□□ -0.31
LSM1-201ENST00000311351 NFYBP25208 207 aa13.12□□□□□ -0.31
LSM1-201ENST00000311351 KIR2DS4P43632 304 aa13.12□□□□□ -0.31
LSM1-201ENST00000311351 HABP2Q14520 560 aaPredicted RBP13.12□□□□□ -0.31
LSM1-201ENST00000311351 OR2T6Q8NHC8 308 aa13.12□□□□□ -0.31
LSM1-201ENST00000311351 MRGPRDQ8TDS7 321 aa13.12□□□□□ -0.31
LSM1-201ENST00000311351 OR5M11Q96RB7 305 aa13.12□□□□□ -0.31
LSM1-201ENST00000311351 MND1Q9BWT6 205 aa13.12□□□□□ -0.31
LSM1-201ENST00000311351 ZNF702PQ9H963 129 aa13.12□□□□□ -0.31
LSM1-201ENST00000311351 FOXJ3Q9UPW0 622 aa13.12□□□□□ -0.31
LSM1-201ENST00000311351 MRPS28Q9Y2Q9 187 aaKnown RBP13.12□□□□□ -0.31
LSM1-201ENST00000311351 TIMM23O14925 209 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms