RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 MDH2P40926 338 aaKnown RBP16.93■□□□□ 0.3
USP48-201ENST00000308271 KIR2DL1P43626 348 aaPredicted RBP16.93■□□□□ 0.3
USP48-201ENST00000308271 TMEM50BP56557 158 aa16.93■□□□□ 0.3
USP48-201ENST00000308271 SCGB2A2Q13296 93 aa16.93■□□□□ 0.3
USP48-201ENST00000308271 SLC10A1Q14973 349 aa16.93■□□□□ 0.3
USP48-201ENST00000308271 CISD2Q8N5K1 135 aaKnown RBP16.93■□□□□ 0.3
USP48-201ENST00000308271 ZNF721Q8TF20 911 aa16.93■□□□□ 0.3
USP48-201ENST00000308271 GGACTQ9BVM4 153 aa16.93■□□□□ 0.3
USP48-201ENST00000308271 ANGPTL4Q9BY76 406 aa16.93■□□□□ 0.3
USP48-201ENST00000308271 AQP7O14520 342 aa16.92■□□□□ 0.3
USP48-201ENST00000308271 FCGR3AP08637 254 aa16.92■□□□□ 0.3
USP48-201ENST00000308271 CEACAM6P40199 344 aa16.92■□□□□ 0.3
USP48-201ENST00000308271 TMEM92Q6UXU6 159 aa16.92■□□□□ 0.3
USP48-201ENST00000308271 S1PR3Q99500 378 aa16.92■□□□□ 0.3
USP48-201ENST00000308271 CCL28Q9NRJ3 127 aa16.92■□□□□ 0.3
USP48-201ENST00000308271 TRBV23-1A0A0A0MS06 115 aa16.92■□□□□ 0.3
USP48-201ENST00000308271 RRP8O43159 456 aaKnown RBP16.92■□□□□ 0.3
USP48-201ENST00000308271 MELTFP08582 738 aa16.92■□□□□ 0.3
USP48-201ENST00000308271 OR10J1P30954 320 aa16.92■□□□□ 0.3
USP48-201ENST00000308271 ID4P47928 161 aa16.92■□□□□ 0.3
USP48-201ENST00000308271 AARDQ4LEZ3 155 aa16.92■□□□□ 0.3
USP48-201ENST00000308271 ZNF519Q8TB69 540 aa16.92■□□□□ 0.3
USP48-201ENST00000308271 G6PC2Q9NQR9 355 aa16.92■□□□□ 0.3
USP48-201ENST00000308271 DUSP13Q9UII6 198 aa16.92■□□□□ 0.3
USP48-201ENST00000308271 BRCA1P38398 1863 aaKnown RBP16.92■□□□□ 0.3
USP48-201ENST00000308271 FAM3BP58499 235 aaPredicted RBP16.92■□□□□ 0.3
USP48-201ENST00000308271 APCDD1LQ8NCL9 501 aa16.92■□□□□ 0.3
USP48-201ENST00000308271 KCNK17Q96T54 332 aa16.92■□□□□ 0.3
USP48-201ENST00000308271 TAAR3PQ9P1P4 343 aa16.92■□□□□ 0.3
USP48-201ENST00000308271 IGHV3-64DA0A0J9YX35 117 aa16.92■□□□□ 0.3
USP48-201ENST00000308271 A0A0U1RQV5 110 aa16.92■□□□□ 0.3
USP48-201ENST00000308271 OR10J4P0C629 311 aa16.92■□□□□ 0.3
USP48-201ENST00000308271 CRISP2P16562 243 aa16.92■□□□□ 0.3
USP48-201ENST00000308271 ZNF25P17030 456 aaPredicted RBP16.92■□□□□ 0.3
USP48-201ENST00000308271 SUCLG1P53597 346 aaKnown RBP16.92■□□□□ 0.3
USP48-201ENST00000308271 C1orf53Q5VUE5 145 aa16.92■□□□□ 0.3
USP48-201ENST00000308271 ZNF880Q6PDB4 577 aa16.92■□□□□ 0.3
USP48-201ENST00000308271 ZNRF4Q8WWF5 429 aa16.92■□□□□ 0.3
USP48-201ENST00000308271 CLCF1Q9UBD9 225 aa16.92■□□□□ 0.3
USP48-201ENST00000308271 PATJQ8NI35 1801 aa16.92■□□□□ 0.3
USP48-201ENST00000308271 H0Y8G0 127 aa16.91■□□□□ 0.3
USP48-201ENST00000308271 COL19A1Q14993 1142 aa16.91■□□□□ 0.3
USP48-201ENST00000308271 ABHD14BQ96IU4 210 aa16.91■□□□□ 0.3
USP48-201ENST00000308271 GPR61Q9BZJ8 451 aa16.91■□□□□ 0.3
USP48-201ENST00000308271 SLC7A10Q9NS82 523 aa16.91■□□□□ 0.3
USP48-201ENST00000308271 TRAF3IP2O43734 574 aaPredicted RBP16.91■□□□□ 0.3
USP48-201ENST00000308271 ZNF708P17019 499 aa16.91■□□□□ 0.3
USP48-201ENST00000308271 SUB1P53999 127 aaKnown RBP eCLIP16.91■□□□□ 0.32e-6■■■■□ 20.7
USP48-201ENST00000308271 SERF2P84101 59 aa16.91■□□□□ 0.3
USP48-201ENST00000308271 REG4Q9BYZ8 158 aa16.91■□□□□ 0.3
USP48-201ENST00000308271 CACNA1GO43497 2377 aa16.91■□□□□ 0.3
USP48-201ENST00000308271 MSGN1A6NI15 193 aa16.91■□□□□ 0.3
USP48-201ENST00000308271 HRASP01112 189 aa16.91■□□□□ 0.3
USP48-201ENST00000308271 ACAA1P09110 424 aaPredicted RBP16.91■□□□□ 0.3
USP48-201ENST00000308271 LINC00469Q8N7U9 141 aa16.91■□□□□ 0.3
USP48-201ENST00000308271 MUCL1Q96DR8 90 aa16.91■□□□□ 0.3
USP48-201ENST00000308271 LY6G6FQ5SQ64 297 aa16.91■□□□□ 0.3
USP48-201ENST00000308271 SMIM8Q96KF7 97 aa16.91■□□□□ 0.3
USP48-201ENST00000308271 FAM206AQ9NX38 181 aa16.91■□□□□ 0.3
USP48-201ENST00000308271 PPP1CCP36873 323 aaKnown RBP16.9■□□□□ 0.3
USP48-201ENST00000308271 RHBDD2Q6NTF9 364 aa16.9■□□□□ 0.3
USP48-201ENST00000308271 UBALD1Q8TB05 177 aa16.9■□□□□ 0.3
USP48-201ENST00000308271 MRPL30Q8TCC3 161 aaKnown RBP16.9■□□□□ 0.3
USP48-201ENST00000308271 AICDAQ9GZX7 198 aa16.9■□□□□ 0.3
USP48-201ENST00000308271 TMEM9BQ9NQ34 198 aa16.9■□□□□ 0.3
USP48-201ENST00000308271 PSME4Q14997 1843 aa16.9■□□□□ 0.3
USP48-201ENST00000308271 C11orf94C9JXX5 98 aa16.9■□□□□ 0.3
USP48-201ENST00000308271 LINC01387J3KSC0 135 aa16.9■□□□□ 0.3
USP48-201ENST00000308271 RUNX1Q01196 453 aa16.9■□□□□ 0.3
USP48-201ENST00000308271 PIGYQ3MUY2 71 aa16.9■□□□□ 0.3
USP48-201ENST00000308271 THOC3Q96J01 351 aaKnown RBP16.9■□□□□ 0.3
USP48-201ENST00000308271 KIAA1324LA8MWY0 1029 aaPredicted RBP16.9■□□□□ 0.3
USP48-201ENST00000308271 NGFP01138 241 aa16.9■□□□□ 0.3
USP48-201ENST00000308271 PCED1AQ9H1Q7 454 aa16.9■□□□□ 0.3
USP48-201ENST00000308271 LINC00587B1AMM8 73 aa16.89■□□□□ 0.3
USP48-201ENST00000308271 H0YL77 283 aa16.89■□□□□ 0.3
USP48-201ENST00000308271 LINC01565O15544 149 aa16.89■□□□□ 0.3
USP48-201ENST00000308271 ADAM11O75078 769 aa16.89■□□□□ 0.3
USP48-201ENST00000308271 PRSS12P56730 875 aa16.89■□□□□ 0.3
USP48-201ENST00000308271 RPS16P62249 146 aaKnown RBP16.89■□□□□ 0.3
USP48-201ENST00000308271 OCIAD1Q9NX40 245 aa16.89■□□□□ 0.3
USP48-201ENST00000308271 ARL2-SNX15V9GYD0 113 aa16.89■□□□□ 0.3
USP48-201ENST00000308271 MYOFQ9NZM1 2061 aa16.89■□□□□ 0.29
USP48-201ENST00000308271 OR5B21A6NL26 309 aa16.89■□□□□ 0.29
USP48-201ENST00000308271 SOX15O60248 233 aa16.89■□□□□ 0.29
USP48-201ENST00000308271 TSPAN2O60636 221 aa16.89■□□□□ 0.29
USP48-201ENST00000308271 TOX4O94842 621 aa16.89■□□□□ 0.29
USP48-201ENST00000308271 GCGP01275 180 aa16.89■□□□□ 0.29
USP48-201ENST00000308271 PATE4P0C8F1 98 aa16.89■□□□□ 0.29
USP48-201ENST00000308271 KLK2P20151 261 aa16.89■□□□□ 0.29
USP48-201ENST00000308271 ZNF385CQ66K41 422 aaPredicted RBP16.89■□□□□ 0.29
USP48-201ENST00000308271 WDR73Q6P4I2 378 aa16.89■□□□□ 0.29
USP48-201ENST00000308271 OR4C5Q8NGB2 326 aa16.89■□□□□ 0.29
USP48-201ENST00000308271 OR10G8Q8NGN5 311 aa16.89■□□□□ 0.29
USP48-201ENST00000308271 IP6K3Q96PC2 410 aa16.89■□□□□ 0.29
USP48-201ENST00000308271 TUBD1Q9UJT1 453 aa16.89■□□□□ 0.29
USP48-201ENST00000308271 CTXND1A0A1B0GTU2 59 aa16.89■□□□□ 0.29
USP48-201ENST00000308271 CHEK1O14757 476 aa16.89■□□□□ 0.29
USP48-201ENST00000308271 IGFBP7Q16270 282 aa16.89■□□□□ 0.29
USP48-201ENST00000308271 SF3B5Q9BWJ5 86 aaKnown RBP16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms