RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 CCL28Q9NRJ3 127 aa15.28■□□□□ 0.04
SYNPO-201ENST00000307662 TTC3P53804 2025 aa15.27■□□□□ 0.04
SYNPO-201ENST00000307662 CTXND1A0A1B0GTU2 59 aa15.27■□□□□ 0.04
SYNPO-201ENST00000307662 A0A1W2PQD3 144 aa15.27■□□□□ 0.04
SYNPO-201ENST00000307662 LSM6P62312 80 aaKnown RBP15.27■□□□□ 0.04
SYNPO-201ENST00000307662 RNPS1Q15287 305 aaKnown RBP15.27■□□□□ 0.04
SYNPO-201ENST00000307662 MRPL54Q6P161 138 aaKnown RBP15.27■□□□□ 0.04
SYNPO-201ENST00000307662 VSTM2LQ96N03 204 aa15.27■□□□□ 0.04
SYNPO-201ENST00000307662 PRRG2O14669 202 aa15.27■□□□□ 0.04
SYNPO-201ENST00000307662 KCNAB3O43448 404 aa15.27■□□□□ 0.04
SYNPO-201ENST00000307662 NDUFB3O43676 98 aa15.27■□□□□ 0.04
SYNPO-201ENST00000307662 CFDP00746 253 aaPredicted RBP15.27■□□□□ 0.04
SYNPO-201ENST00000307662 GAPDHP04406 335 aaKnown RBP15.27■□□□□ 0.04
SYNPO-201ENST00000307662 MRGPRDQ8TDS7 321 aa15.27■□□□□ 0.04
SYNPO-201ENST00000307662 HSD17B10Q99714 261 aaKnown RBP15.27■□□□□ 0.04
SYNPO-201ENST00000307662 A0A1B0GU03 582 aa15.27■□□□□ 0.03
SYNPO-201ENST00000307662 A0A1W2PN81 502 aa15.27■□□□□ 0.03
SYNPO-201ENST00000307662 COL19A1Q14993 1142 aa15.27■□□□□ 0.03
SYNPO-201ENST00000307662 PSG5Q15238 335 aa15.27■□□□□ 0.03
SYNPO-201ENST00000307662 HLA-BQ31612 363 aa15.27■□□□□ 0.03
SYNPO-201ENST00000307662 C1QL3Q5VWW1 255 aa15.27■□□□□ 0.03
SYNPO-201ENST00000307662 TMEM211Q6ICI0 200 aa15.27■□□□□ 0.03
SYNPO-201ENST00000307662 PDPNQ86YL7 162 aa15.27■□□□□ 0.03
SYNPO-201ENST00000307662 R3HDM4Q96D70 268 aa15.27■□□□□ 0.03
SYNPO-201ENST00000307662 MS4A3Q96HJ5 214 aa15.27■□□□□ 0.03
SYNPO-201ENST00000307662 SIGLEC5O15389 551 aa15.27■□□□□ 0.03
SYNPO-201ENST00000307662 SIGLEC14Q08ET2 396 aa15.27■□□□□ 0.03
SYNPO-201ENST00000307662 H1FOOQ8IZA3 346 aaPredicted RBP15.27■□□□□ 0.03
SYNPO-201ENST00000307662 MPC1Q9Y5U8 109 aa15.27■□□□□ 0.03
SYNPO-201ENST00000307662 IGHV5-51A0A0C4DH38 117 aa15.26■□□□□ 0.03
SYNPO-201ENST00000307662 DIRC3C9JPN6 131 aa15.26■□□□□ 0.03
SYNPO-201ENST00000307662 SUCLG1P53597 346 aaKnown RBP15.26■□□□□ 0.03
SYNPO-201ENST00000307662 PAFAH1B2P68402 229 aa15.26■□□□□ 0.03
SYNPO-201ENST00000307662 OR4P4Q8NGL7 312 aa15.26■□□□□ 0.03
SYNPO-201ENST00000307662 KNL1Q8NG31 2342 aa15.26■□□□□ 0.03
SYNPO-201ENST00000307662 METTL12A8MUP2 240 aa15.26■□□□□ 0.03
SYNPO-201ENST00000307662 CYB5R3P00387 301 aaPredicted RBP15.26■□□□□ 0.03
SYNPO-201ENST00000307662 HLA-DQB1P01920 261 aa15.26■□□□□ 0.03
SYNPO-201ENST00000307662 OR1C1Q15619 314 aa15.26■□□□□ 0.03
SYNPO-201ENST00000307662 ANKRD55Q3KP44 614 aa15.26■□□□□ 0.03
SYNPO-201ENST00000307662 MYO7AQ13402 2215 aa15.26■□□□□ 0.03
SYNPO-201ENST00000307662 SRSF10O75494 262 aaKnown RBP15.26■□□□□ 0.03
SYNPO-201ENST00000307662 HOXC4P09017 264 aaPredicted RBP15.26■□□□□ 0.03
SYNPO-201ENST00000307662 NAT2P11245 290 aa15.26■□□□□ 0.03
SYNPO-201ENST00000307662 TMEM50BP56557 158 aa15.26■□□□□ 0.03
SYNPO-201ENST00000307662 ZNF385CQ66K41 422 aaPredicted RBP15.26■□□□□ 0.03
SYNPO-201ENST00000307662 CYB561D1Q8N8Q1 229 aa15.26■□□□□ 0.03
SYNPO-201ENST00000307662 PRSS1P07477 247 aa15.26■□□□□ 0.03
SYNPO-201ENST00000307662 GABRG2P18507 467 aa15.26■□□□□ 0.03
SYNPO-201ENST00000307662 TNFRSF1AP19438 455 aa15.26■□□□□ 0.03
SYNPO-201ENST00000307662 Q56UQ5 140 aa15.26■□□□□ 0.03
SYNPO-201ENST00000307662 OR4S2Q8NH73 311 aa15.26■□□□□ 0.03
SYNPO-201ENST00000307662 IL36GQ9NZH8 169 aa15.26■□□□□ 0.03
SYNPO-201ENST00000307662 WASHC3Q9Y3C0 194 aa15.26■□□□□ 0.03
SYNPO-201ENST00000307662 SCN1AP35498 2009 aa15.26■□□□□ 0.03
SYNPO-201ENST00000307662 APCSP02743 223 aa15.25■□□□□ 0.03
SYNPO-201ENST00000307662 BCL2P10415 239 aa15.25■□□□□ 0.03
SYNPO-201ENST00000307662 ACAA2P42765 397 aaKnown RBP15.25■□□□□ 0.03
SYNPO-201ENST00000307662 NANOS3P60323 173 aaKnown RBP15.25■□□□□ 0.03
SYNPO-201ENST00000307662 CCL7P80098 99 aa15.25■□□□□ 0.03
SYNPO-201ENST00000307662 D2HGDHQ8N465 521 aa15.25■□□□□ 0.03
SYNPO-201ENST00000307662 RNF133Q8WVZ7 376 aa15.25■□□□□ 0.03
SYNPO-201ENST00000307662 SLC26A1Q9H2B4 701 aa15.25■□□□□ 0.03
SYNPO-201ENST00000307662 K7ERU9 68 aa15.25■□□□□ 0.03
SYNPO-201ENST00000307662 GCGP01275 180 aa15.25■□□□□ 0.03
SYNPO-201ENST00000307662 OR13G1Q8NGZ3 307 aa15.25■□□□□ 0.03
SYNPO-201ENST00000307662 LOC102724200A0A096LPH7 203 aaPredicted RBP15.25■□□□□ 0.03
SYNPO-201ENST00000307662 PTP4A3O75365 173 aa15.25■□□□□ 0.03
SYNPO-201ENST00000307662 LDLRAD3Q86YD5 345 aa15.25■□□□□ 0.03
SYNPO-201ENST00000307662 BPIFA4PQ86YQ2 179 aa15.25■□□□□ 0.03
SYNPO-201ENST00000307662 LILRB1Q8NHL6 650 aaPredicted RBP15.25■□□□□ 0.03
SYNPO-201ENST00000307662 OR5AC2Q9NZP5 309 aa15.25■□□□□ 0.03
SYNPO-201ENST00000307662 LIPT2A6NK58 231 aa15.25■□□□□ 0.03
SYNPO-201ENST00000307662 PATE4P0C8F1 98 aa15.25■□□□□ 0.03
SYNPO-201ENST00000307662 SPEM1Q8N4L4 309 aa15.25■□□□□ 0.03
SYNPO-201ENST00000307662 GPBAR1Q8TDU6 330 aa15.25■□□□□ 0.03
SYNPO-201ENST00000307662 HSPB8Q9UJY1 196 aa15.25■□□□□ 0.03
SYNPO-201ENST00000307662 HELTA6NFD8 242 aa15.25■□□□□ 0.03
SYNPO-201ENST00000307662 TRGC2P03986 189 aa15.25■□□□□ 0.03
SYNPO-201ENST00000307662 C9orf50Q5SZB4 431 aa15.25■□□□□ 0.03
SYNPO-201ENST00000307662 ATG101Q9BSB4 218 aa15.25■□□□□ 0.03
SYNPO-201ENST00000307662 ADAM11O75078 769 aa15.24■□□□□ 0.03
SYNPO-201ENST00000307662 STAG3L2P0CL84 134 aa15.24■□□□□ 0.03
SYNPO-201ENST00000307662 MYF5P13349 255 aa15.24■□□□□ 0.03
SYNPO-201ENST00000307662 ZFP36L2P47974 494 aaKnown RBP15.24■□□□□ 0.03
SYNPO-201ENST00000307662 SLC36A1Q7Z2H8 476 aa15.24■□□□□ 0.03
SYNPO-201ENST00000307662 OR10D3Q8NH80 312 aa15.24■□□□□ 0.03
SYNPO-201ENST00000307662 NAGKQ9UJ70 344 aa15.24■□□□□ 0.03
SYNPO-201ENST00000307662 ZNF205O95201 554 aa15.24■□□□□ 0.03
SYNPO-201ENST00000307662 CXorf1O96002 111 aa15.24■□□□□ 0.03
SYNPO-201ENST00000307662 P01737 135 aa15.24■□□□□ 0.03
SYNPO-201ENST00000307662 FAM157CP0CG43 387 aa15.24■□□□□ 0.03
SYNPO-201ENST00000307662 ORM2P19652 201 aa15.24■□□□□ 0.03
SYNPO-201ENST00000307662 ZNF343Q6P1L6 599 aa15.24■□□□□ 0.03
SYNPO-201ENST00000307662 FOXQ1Q9C009 403 aa15.24■□□□□ 0.03
SYNPO-201ENST00000307662 ZFP64Q9NPA5 681 aa15.24■□□□□ 0.03
SYNPO-201ENST00000307662 MRPS18BQ9Y676 258 aaKnown RBP15.24■□□□□ 0.03
SYNPO-201ENST00000307662 MEX3AA1L020 520 aaKnown RBP15.24■□□□□ 0.03
SYNPO-201ENST00000307662 NHLRC3Q5JS37 347 aa15.24■□□□□ 0.03
SYNPO-201ENST00000307662 ADTRPQ96IZ2 230 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms