RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 TBC1D26Q86UD7 250 aa14.28□□□□□ -0.12
VPS54-201ENST00000272322 CD300LFQ8TDQ1 290 aa14.28□□□□□ -0.12
VPS54-201ENST00000272322 NTNG2Q96CW9 530 aa14.28□□□□□ -0.12
VPS54-201ENST00000272322 OR14J1Q9UGF5 321 aa14.28□□□□□ -0.12
VPS54-201ENST00000272322 CEACAM18A8MTB9 384 aa14.28□□□□□ -0.12
VPS54-201ENST00000272322 SIRPB1O00241 398 aa14.28□□□□□ -0.12
VPS54-201ENST00000272322 OR13C7P0DN81 318 aa14.28□□□□□ -0.12
VPS54-201ENST00000272322 CLDN18P56856 261 aa14.28□□□□□ -0.12
VPS54-201ENST00000272322 RPS16P62249 146 aaKnown RBP14.28□□□□□ -0.12
VPS54-201ENST00000272322 PLP2Q04941 152 aa14.28□□□□□ -0.12
VPS54-201ENST00000272322 ZNF818PQ6ZRF7 136 aa14.28□□□□□ -0.12
VPS54-201ENST00000272322 FAM173AQ9BQD7 235 aa14.28□□□□□ -0.12
VPS54-201ENST00000272322 B4GALT7Q9UBV7 327 aa14.28□□□□□ -0.12
VPS54-201ENST00000272322 FBXO9Q9UK97 447 aaPredicted RBP14.28□□□□□ -0.12
VPS54-201ENST00000272322 FGF16O43320 207 aa14.27□□□□□ -0.12
VPS54-201ENST00000272322 ADAM20O43506 726 aa14.27□□□□□ -0.12
VPS54-201ENST00000272322 LYZL6O75951 148 aa14.27□□□□□ -0.12
VPS54-201ENST00000272322 CBR1P16152 277 aa14.27□□□□□ -0.12
VPS54-201ENST00000272322 CEBPDP49716 269 aaPredicted RBP14.27□□□□□ -0.12
VPS54-201ENST00000272322 MEOX1P50221 254 aa14.27□□□□□ -0.12
VPS54-201ENST00000272322 ARL6IP1Q15041 203 aa14.27□□□□□ -0.12
VPS54-201ENST00000272322 ADAMTS17Q8TE56 1095 aa14.27□□□□□ -0.12
VPS54-201ENST00000272322 TK1P04183 234 aa14.27□□□□□ -0.13
VPS54-201ENST00000272322 RUNX1Q01196 453 aa14.27□□□□□ -0.13
VPS54-201ENST00000272322 IL15RAQ13261 267 aa14.27□□□□□ -0.13
VPS54-201ENST00000272322 ALKBH6Q3KRA9 238 aa14.27□□□□□ -0.13
VPS54-201ENST00000272322 OR2B11Q5JQS5 317 aa14.27□□□□□ -0.13
VPS54-201ENST00000272322 SPAG16Q8N0X2 631 aa14.27□□□□□ -0.13
VPS54-201ENST00000272322 ZFP62Q8NB50 900 aaPredicted RBP14.27□□□□□ -0.13
VPS54-201ENST00000272322 RPS10P5Q9NQ39 176 aa14.27□□□□□ -0.13
VPS54-201ENST00000272322 GLS2Q9UI32 602 aa14.27□□□□□ -0.13
VPS54-201ENST00000272322 ZNF175Q9Y473 711 aa14.27□□□□□ -0.13
VPS54-201ENST00000272322 HSPA12AO43301 675 aa14.27□□□□□ -0.13
VPS54-201ENST00000272322 GRPP07492 148 aa14.27□□□□□ -0.13
VPS54-201ENST00000272322 LIAT1Q6ZQX7 453 aa14.27□□□□□ -0.13
VPS54-201ENST00000272322 MKXQ8IYA7 352 aa14.27□□□□□ -0.13
VPS54-201ENST00000272322 SYT3Q9BQG1 590 aa14.27□□□□□ -0.13
VPS54-201ENST00000272322 C3orf85A0A1B0GTC6 90 aa14.26□□□□□ -0.13
VPS54-201ENST00000272322 CD300LBA8K4G0 201 aa14.26□□□□□ -0.13
VPS54-201ENST00000272322 B4E171 279 aa14.26□□□□□ -0.13
VPS54-201ENST00000272322 TSPAN7P41732 249 aa14.26□□□□□ -0.13
VPS54-201ENST00000272322 DAZAP2Q15038 168 aaPredicted RBP14.26□□□□□ -0.13
VPS54-201ENST00000272322 RNFT1Q5M7Z0 435 aa14.26□□□□□ -0.13
VPS54-201ENST00000272322 DHRS11Q6UWP2 260 aa14.26□□□□□ -0.13
VPS54-201ENST00000272322 ZDHHC23Q8IYP9 409 aa14.26□□□□□ -0.13
VPS54-201ENST00000272322 NRIP2Q9BQI9 281 aa14.26□□□□□ -0.13
VPS54-201ENST00000272322 ZDHHC8Q9ULC8 765 aa14.26□□□□□ -0.13
VPS54-201ENST00000272322 PCSK5Q92824 1860 aa14.26□□□□□ -0.13
VPS54-201ENST00000272322 ST8SIA3O43173 380 aa14.26□□□□□ -0.13
VPS54-201ENST00000272322 ARG2P78540 354 aa14.26□□□□□ -0.13
VPS54-201ENST00000272322 CNEP1R1Q8N9A8 125 aa14.26□□□□□ -0.13
VPS54-201ENST00000272322 MMP26Q9NRE1 261 aa14.26□□□□□ -0.13
VPS54-201ENST00000272322 PPP1R3CQ9UQK1 317 aa14.26□□□□□ -0.13
VPS54-201ENST00000272322 PROB1E7EW31 1015 aa14.25□□□□□ -0.13
VPS54-201ENST00000272322 MPPED1O15442 326 aa14.25□□□□□ -0.13
VPS54-201ENST00000272322 CST4P01036 141 aa14.25□□□□□ -0.13
VPS54-201ENST00000272322 HES3Q5TGS1 186 aa14.25□□□□□ -0.13
VPS54-201ENST00000272322 LGI3Q8N145 548 aa14.25□□□□□ -0.13
VPS54-201ENST00000272322 KIRREL1Q96J84 757 aa14.25□□□□□ -0.13
VPS54-201ENST00000272322 RNF150Q9ULK6 438 aa14.25□□□□□ -0.13
VPS54-201ENST00000272322 EDARQ9UNE0 448 aa14.25□□□□□ -0.13
VPS54-201ENST00000272322 APC2O95996 2303 aa14.25□□□□□ -0.13
VPS54-201ENST00000272322 INTS1Q8N201 2190 aaKnown RBP14.25□□□□□ -0.13
VPS54-201ENST00000272322 TMEM265A0A087WTH1 108 aa14.25□□□□□ -0.13
VPS54-201ENST00000272322 TERTO14746 1132 aaKnown RBP14.25□□□□□ -0.13
VPS54-201ENST00000272322 CCL11P51671 97 aa14.25□□□□□ -0.13
VPS54-201ENST00000272322 CLN3Q13286 438 aa14.25□□□□□ -0.13
VPS54-201ENST00000272322 GNMTQ14749 295 aa14.25□□□□□ -0.13
VPS54-201ENST00000272322 FAM122CQ6P4D5 195 aa14.25□□□□□ -0.13
VPS54-201ENST00000272322 MSI2Q96DH6 328 aaKnown RBP14.25□□□□□ -0.13
VPS54-201ENST00000272322 ERRFI1Q9UJM3 462 aaPredicted RBP14.25□□□□□ -0.13
VPS54-201ENST00000272322 ACP1P24666 158 aa14.25□□□□□ -0.13
VPS54-201ENST00000272322 HERPUD1Q15011 391 aa14.25□□□□□ -0.13
VPS54-201ENST00000272322 OR8B8Q15620 311 aa14.25□□□□□ -0.13
VPS54-201ENST00000272322 OR10Z1Q8NGY1 313 aa14.25□□□□□ -0.13
VPS54-201ENST00000272322 RBMXL1Q96E39 390 aaKnown RBP14.25□□□□□ -0.13
VPS54-201ENST00000272322 WRBO00258 174 aa14.24□□□□□ -0.13
VPS54-201ENST00000272322 PPP1CCP36873 323 aaKnown RBP14.24□□□□□ -0.13
VPS54-201ENST00000272322 KCNJ3P48549 501 aa14.24□□□□□ -0.13
VPS54-201ENST00000272322 SURF2Q15527 256 aaPredicted RBP14.24□□□□□ -0.13
VPS54-201ENST00000272322 TMEM42Q69YG0 159 aa14.24□□□□□ -0.13
VPS54-201ENST00000272322 EIF5AL1Q6IS14 154 aaKnown RBP14.24□□□□□ -0.13
VPS54-201ENST00000272322 DPPA2Q7Z7J5 298 aa14.24□□□□□ -0.13
VPS54-201ENST00000272322 KCNS2Q9ULS6 477 aa14.24□□□□□ -0.13
VPS54-201ENST00000272322 RAB19A4D1S5 217 aa14.24□□□□□ -0.13
VPS54-201ENST00000272322 MT-CO3P00414 261 aa14.24□□□□□ -0.13
VPS54-201ENST00000272322 STK11Q15831 433 aa14.24□□□□□ -0.13
VPS54-201ENST00000272322 KRBOX4Q5JUW0 171 aa14.24□□□□□ -0.13
VPS54-201ENST00000272322 IP6K3Q96PC2 410 aa14.24□□□□□ -0.13
VPS54-201ENST00000272322 UFSP2Q9NUQ7 469 aa14.24□□□□□ -0.13
VPS54-201ENST00000272322 HSF4Q9ULV5 492 aa14.24□□□□□ -0.13
VPS54-201ENST00000272322 WDR1O75083 606 aa14.24□□□□□ -0.13
VPS54-201ENST00000272322 JTBO76095 146 aa14.24□□□□□ -0.13
VPS54-201ENST00000272322 IGHEP01854 428 aa14.24□□□□□ -0.13
VPS54-201ENST00000272322 HOXA6P31267 233 aa14.24□□□□□ -0.13
VPS54-201ENST00000272322 APLNRP35414 380 aa14.24□□□□□ -0.13
VPS54-201ENST00000272322 REPIN1Q9BWE0 567 aaKnown RBP14.24□□□□□ -0.13
VPS54-201ENST00000272322 C1QTNF5Q9BXJ0 243 aa14.24□□□□□ -0.13
VPS54-201ENST00000272322 SPACA1Q9HBV2 294 aa14.24□□□□□ -0.13
VPS54-201ENST00000272322 OR1A1Q9P1Q5 309 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms