RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 TOMM20LQ6UXN7 152 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 CBLN2Q8IUK8 224 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 ADAD2Q8NCV1 583 aaKnown RBP9.44□□□□□ -0.9
CD44-201ENST00000263398 OR10AD1Q8NGE0 317 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 OR4S2Q8NH73 311 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 MAFAQ8NHW3 353 aaPredicted RBP9.44□□□□□ -0.9
CD44-201ENST00000263398 CT55Q8WUE5 264 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 BCL2L2Q92843 193 aaPredicted RBP9.44□□□□□ -0.9
CD44-201ENST00000263398 GAL3ST2Q9H3Q3 398 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 CCL28Q9NRJ3 127 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 TMEM38BQ9NVV0 291 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 MRPS18BQ9Y676 258 aaKnown RBP9.44□□□□□ -0.9
CD44-201ENST00000263398 TRBV5-5A0A0J9YX44 114 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 CDRT15L2A8MXV6 281 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 FCER1GP30273 86 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 FGF8P55075 233 aaPredicted RBP9.44□□□□□ -0.9
CD44-201ENST00000263398 LAIR2Q6ISS4 152 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 LYZL2Q7Z4W2 148 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 SFTPA2Q8IWL1 248 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 TUSC5Q8IXB3 177 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 OR5A2Q8NGI9 324 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 PGLYRP3Q96LB9 341 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 NOL4LQ96MY1 436 aaPredicted RBP9.44□□□□□ -0.9
CD44-201ENST00000263398 WDR54Q9H977 334 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 GPR35Q9HC97 309 aa9.44□□□□□ -0.9
CD44-201ENST00000263398 KLK10O43240 276 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 SOX15O60248 233 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 ACTL6AO96019 429 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 LIFP15018 202 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 GNG4P50150 75 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 ROM1Q03395 351 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 TMEM108Q6UXF1 575 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 C1orf210Q8IVY1 113 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 RFLNBQ8N5W9 214 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 CHAC2Q8WUX2 184 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 WFDC6Q9BQY6 131 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 SH2D2AQ9NP31 389 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 PARP11Q9NR21 331 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 NAT8Q9UHE5 227 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 VSIG4Q9Y279 399 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 ZDBF2Q9HCK1 2354 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 TRAV20A0A0B4J274 112 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 MFNGO00587 321 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 PMCHP20382 165 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 TNFAIP6P98066 277 aaPredicted RBP9.43□□□□□ -0.9
CD44-201ENST00000263398 EWSR1Q01844 656 aaKnown RBP eCLIP9.43□□□□□ -0.9
CD44-201ENST00000263398 PRSS53Q2L4Q9 553 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 VAX1Q5SQQ9 334 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 ACSM6Q6P461 480 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 MYPOPQ86VE0 399 aaPredicted RBP9.43□□□□□ -0.9
CD44-201ENST00000263398 OR4D10Q8NGI6 311 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 LHFPL5Q8TAF8 219 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 ISOC2Q96AB3 205 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 FZR1Q9UM11 496 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 A0A1W2PN81 502 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 B4DEV8 164 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 GZMHP20718 246 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 VAMP3Q15836 100 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 SSX7Q7RTT5 188 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 SMRP1Q8NCR6 262 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 OR2T10Q8NGZ9 312 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 MS4A10Q96PG2 267 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 AAMDCQ9H7C9 122 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 Q9N2K0 584 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 MANBALQ9NQG1 85 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 SF3B6Q9Y3B4 125 aaKnown RBP9.43□□□□□ -0.9
CD44-201ENST00000263398 LOC102723971A0A1B0GUV8 181 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 CDIPTO14735 213 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 ANKRD34CP0C6C1 535 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 VSIG10L2P0DP72 767 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 BMP5P22003 454 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 PAX6P26367 422 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 SULT1A1P50225 295 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 GNB2P62879 340 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 ZXDCQ2QGD7 858 aaPredicted RBP9.43□□□□□ -0.9
CD44-201ENST00000263398 WDR61Q9GZS3 305 aaKnown RBP9.43□□□□□ -0.9
CD44-201ENST00000263398 RAB33BQ9H082 229 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 CLEC1BQ9P126 229 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 OR2W1Q9Y3N9 320 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 PIKFYVEQ9Y2I7 2098 aa9.43□□□□□ -0.9
CD44-201ENST00000263398 IGHV5-10-1A0A0J9YXX1 117 aa9.42□□□□□ -0.9
CD44-201ENST00000263398 OOEPA6NGQ2 149 aa9.42□□□□□ -0.9
CD44-201ENST00000263398 C3orf80F5H4A9 247 aa9.42□□□□□ -0.9
CD44-201ENST00000263398 FCN1O00602 326 aa9.42□□□□□ -0.9
CD44-201ENST00000263398 TUSC1Q2TAM9 212 aa9.42□□□□□ -0.9
CD44-201ENST00000263398 FAM27BQ5VT28 67 aa9.42□□□□□ -0.9
CD44-201ENST00000263398 ABHD3Q8WU67 409 aa9.42□□□□□ -0.9
CD44-201ENST00000263398 RPEQ96AT9 228 aa9.42□□□□□ -0.9
CD44-201ENST00000263398 KLK13Q9UKR3 277 aa9.42□□□□□ -0.9
CD44-201ENST00000263398 KCNK7Q9Y2U2 307 aa9.42□□□□□ -0.9
CD44-201ENST00000263398 NKX2-6A6NCS4 301 aa9.42□□□□□ -0.9
CD44-201ENST00000263398 ZNF205O95201 554 aa9.42□□□□□ -0.9
CD44-201ENST00000263398 RPS4Y1P22090 263 aaKnown RBP9.42□□□□□ -0.9
CD44-201ENST00000263398 MRPS11P82912 194 aaKnown RBP9.42□□□□□ -0.9
CD44-201ENST00000263398 ZNF154Q13106 437 aa9.42□□□□□ -0.9
CD44-201ENST00000263398 PLPPR5Q32ZL2 321 aa9.42□□□□□ -0.9
CD44-201ENST00000263398 FA2HQ7L5A8 372 aa9.42□□□□□ -0.9
CD44-201ENST00000263398 DTD1Q8TEA8 209 aa9.42□□□□□ -0.9
CD44-201ENST00000263398 R3HDM4Q96D70 268 aa9.42□□□□□ -0.9
CD44-201ENST00000263398 ZNF385AQ96PM9 386 aaKnown RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms