RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 PIGCQ92535 297 aa10.67□□□□□ -0.7
NUP88-201ENST00000225696 GAR1Q9NY12 217 aaKnown RBP10.67□□□□□ -0.7
NUP88-201ENST00000225696 CRIM1Q9NZV1 1036 aa10.67□□□□□ -0.7
NUP88-201ENST00000225696 KIAA1456Q9P272 454 aa10.67□□□□□ -0.7
NUP88-201ENST00000225696 UBE2J1Q9Y385 318 aaPredicted RBP10.67□□□□□ -0.7
NUP88-201ENST00000225696 WSB1Q9Y6I7 421 aa10.67□□□□□ -0.7
NUP88-201ENST00000225696 CACNA1EQ15878 2313 aa10.67□□□□□ -0.7
NUP88-201ENST00000225696 H3BP45 60 aa10.67□□□□□ -0.7
NUP88-201ENST00000225696 HSPB6O14558 160 aa10.67□□□□□ -0.7
NUP88-201ENST00000225696 CHST1O43916 411 aa10.67□□□□□ -0.7
NUP88-201ENST00000225696 RBM11P57052 281 aaKnown RBP10.67□□□□□ -0.7
NUP88-201ENST00000225696 MRPS34P82930 218 aaKnown RBP10.67□□□□□ -0.7
NUP88-201ENST00000225696 ZNF266Q14584 549 aa10.67□□□□□ -0.7
NUP88-201ENST00000225696 HERPUD1Q15011 391 aa10.67□□□□□ -0.7
NUP88-201ENST00000225696 GUSBP11Q6P575 273 aa10.67□□□□□ -0.7
NUP88-201ENST00000225696 SLC23A3Q6PIS1 610 aa10.67□□□□□ -0.7
NUP88-201ENST00000225696 ZNF695Q8IW36 515 aa10.67□□□□□ -0.7
NUP88-201ENST00000225696 CLDND2Q8NHS1 167 aa10.67□□□□□ -0.7
NUP88-201ENST00000225696 ABHD5Q8WTS1 349 aa10.67□□□□□ -0.7
NUP88-201ENST00000225696 PLEKHF2Q9H8W4 249 aa10.67□□□□□ -0.7
NUP88-201ENST00000225696 TREM2Q9NZC2 230 aa10.67□□□□□ -0.7
NUP88-201ENST00000225696 CDS2O95674 445 aa10.66□□□□□ -0.7
NUP88-201ENST00000225696 MDKP21741 143 aaPredicted RBP10.66□□□□□ -0.7
NUP88-201ENST00000225696 PAX9P55771 341 aa10.66□□□□□ -0.7
NUP88-201ENST00000225696 PSG4Q00888 419 aa10.66□□□□□ -0.7
NUP88-201ENST00000225696 MALLQ13021 153 aa10.66□□□□□ -0.7
NUP88-201ENST00000225696 RAB35Q15286 201 aa10.66□□□□□ -0.7
NUP88-201ENST00000225696 CNN3Q15417 329 aaKnown RBP10.66□□□□□ -0.7
NUP88-201ENST00000225696 C4orf17Q53FE4 359 aa10.66□□□□□ -0.7
NUP88-201ENST00000225696 KHDC3LQ587J8 217 aa10.66□□□□□ -0.7
NUP88-201ENST00000225696 PLCXD3Q63HM9 321 aa10.66□□□□□ -0.7
NUP88-201ENST00000225696 LHFPL2Q6ZUX7 228 aa10.66□□□□□ -0.7
NUP88-201ENST00000225696 SLC25A26Q70HW3 274 aa10.66□□□□□ -0.7
NUP88-201ENST00000225696 TMEM56Q96MV1 263 aa10.66□□□□□ -0.7
NUP88-201ENST00000225696 TMEM56-RWDD3S4R434 201 aa10.66□□□□□ -0.7
NUP88-201ENST00000225696 CEP192Q8TEP8 1941 aa10.66□□□□□ -0.7
NUP88-201ENST00000225696 A0A0G2JRQ6 117 aa10.66□□□□□ -0.7
NUP88-201ENST00000225696 GATCO43716 136 aaKnown RBP10.66□□□□□ -0.7
NUP88-201ENST00000225696 LIFP15018 202 aa10.66□□□□□ -0.7
NUP88-201ENST00000225696 EXT1Q16394 746 aa10.66□□□□□ -0.7
NUP88-201ENST00000225696 NMSQ5H8A3 153 aa10.66□□□□□ -0.7
NUP88-201ENST00000225696 ZNF295-AS1Q8N0V1 137 aa10.66□□□□□ -0.7
NUP88-201ENST00000225696 ZNF611Q8N823 705 aa10.66□□□□□ -0.7
NUP88-201ENST00000225696 CCDC71LQ8N9Z2 235 aa10.66□□□□□ -0.7
NUP88-201ENST00000225696 CADM4Q8NFZ8 388 aa10.66□□□□□ -0.7
NUP88-201ENST00000225696 FRZBQ92765 325 aa10.66□□□□□ -0.7
NUP88-201ENST00000225696 SSX3Q99909 188 aa10.66□□□□□ -0.7
NUP88-201ENST00000225696 VSIRQ9H7M9 311 aa10.66□□□□□ -0.7
NUP88-201ENST00000225696 FREM1Q5H8C1 2179 aa10.66□□□□□ -0.7
NUP88-201ENST00000225696 IGKV1-6A0A0C4DH72 117 aa10.65□□□□□ -0.7
NUP88-201ENST00000225696 hCG_38984A0A1B0GV85 526 aa10.65□□□□□ -0.7
NUP88-201ENST00000225696 CXorf65A6NEN9 183 aa10.65□□□□□ -0.7
NUP88-201ENST00000225696 OR6C6A6NF89 314 aa10.65□□□□□ -0.7
NUP88-201ENST00000225696 ZNF732B4DXR9 585 aa10.65□□□□□ -0.7
NUP88-201ENST00000225696 EDN3P14138 238 aa10.65□□□□□ -0.7
NUP88-201ENST00000225696 FUT3P21217 361 aa10.65□□□□□ -0.7
NUP88-201ENST00000225696 S100A2P29034 98 aa10.65□□□□□ -0.7
NUP88-201ENST00000225696 GLIPR1P48060 266 aa10.65□□□□□ -0.7
NUP88-201ENST00000225696 RPL23AP62750 156 aaKnown RBP10.65□□□□□ -0.7
NUP88-201ENST00000225696 CCL7P80098 99 aa10.65□□□□□ -0.7
NUP88-201ENST00000225696 PCOLCEQ15113 449 aa10.65□□□□□ -0.7
NUP88-201ENST00000225696 ZNF506Q5JVG8 444 aa10.65□□□□□ -0.7
NUP88-201ENST00000225696 DPPA2Q7Z7J5 298 aa10.65□□□□□ -0.7
NUP88-201ENST00000225696 HIST3H2BBQ8N257 126 aa10.65□□□□□ -0.7
NUP88-201ENST00000225696 FGF23Q9GZV9 251 aaPredicted RBP10.65□□□□□ -0.7
NUP88-201ENST00000225696 SMDT1Q9H4I9 107 aa10.65□□□□□ -0.7
NUP88-201ENST00000225696 CCL28Q9NRJ3 127 aa10.65□□□□□ -0.7
NUP88-201ENST00000225696 OCIAD1Q9NX40 245 aa10.65□□□□□ -0.7
NUP88-201ENST00000225696 TAAR3PQ9P1P4 343 aa10.65□□□□□ -0.7
NUP88-201ENST00000225696 RNF115Q9Y4L5 304 aa10.65□□□□□ -0.7
NUP88-201ENST00000225696 A0A087WWC5 75 aa10.65□□□□□ -0.71
NUP88-201ENST00000225696 A0A0G2JMM0 328 aa10.65□□□□□ -0.71
NUP88-201ENST00000225696 IGHV5-10-1A0A0J9YXX1 117 aa10.65□□□□□ -0.71
NUP88-201ENST00000225696 A0A1W2PPB8 328 aa10.65□□□□□ -0.71
NUP88-201ENST00000225696 A0A1W2PRS3 328 aa10.65□□□□□ -0.71
NUP88-201ENST00000225696 SLC22A20A6NK97 555 aa10.65□□□□□ -0.71
NUP88-201ENST00000225696 KIR3DP1A8MWS1 328 aa10.65□□□□□ -0.71
NUP88-201ENST00000225696 WRBO00258 174 aa10.65□□□□□ -0.71
NUP88-201ENST00000225696 NR2C1P13056 603 aa10.65□□□□□ -0.71
NUP88-201ENST00000225696 ID3Q02535 119 aa10.65□□□□□ -0.71
NUP88-201ENST00000225696 GAMTQ14353 236 aa10.65□□□□□ -0.71
NUP88-201ENST00000225696 MPV17LQ2QL34 196 aa10.65□□□□□ -0.71
NUP88-201ENST00000225696 TMEM211Q6ICI0 200 aa10.65□□□□□ -0.71
NUP88-201ENST00000225696 SSX7Q7RTT5 188 aa10.65□□□□□ -0.71
NUP88-201ENST00000225696 MYPOPQ86VE0 399 aaPredicted RBP10.65□□□□□ -0.71
NUP88-201ENST00000225696 CMTM1Q8IZ96 169 aa10.65□□□□□ -0.71
NUP88-201ENST00000225696 EXTL1Q92935 676 aa10.65□□□□□ -0.71
NUP88-201ENST00000225696 CPNE4Q96A23 557 aaPredicted RBP10.65□□□□□ -0.71
NUP88-201ENST00000225696 TVP23CQ96ET8 276 aa10.65□□□□□ -0.71
NUP88-201ENST00000225696 NIPSNAP3BQ9BS92 247 aa10.65□□□□□ -0.71
NUP88-201ENST00000225696 WNT5BQ9H1J7 359 aa10.65□□□□□ -0.71
NUP88-201ENST00000225696 FSCN3Q9NQT6 498 aa10.65□□□□□ -0.71
NUP88-201ENST00000225696 TMEM38BQ9NVV0 291 aa10.65□□□□□ -0.71
NUP88-201ENST00000225696 RARRES3Q9UL19 164 aa10.65□□□□□ -0.71
NUP88-201ENST00000225696 PRRC2CQ9Y520 2896 aaKnown RBP10.64□□□□□ -0.71
NUP88-201ENST00000225696 FAM186AA6NE01 2351 aa10.64□□□□□ -0.71
NUP88-201ENST00000225696 TP53I11O14683 189 aa10.64□□□□□ -0.71
NUP88-201ENST00000225696 IGHV3-9P01782 118 aa10.64□□□□□ -0.71
NUP88-201ENST00000225696 HLA-HP01893 362 aa10.64□□□□□ -0.71
NUP88-201ENST00000225696 HSPB1P04792 205 aaKnown RBP10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms