RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 METTL9Q9H1A3 318 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 TNCP24821 2201 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 A0A1B0GW55 424 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 DUX4L2P0CJ85 424 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 DUX4L3P0CJ86 424 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 DUX4L4P0CJ87 422 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 DUX4L5P0CJ88 424 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 DUX4L6P0CJ89 424 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 DUX4L7P0CJ90 424 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 HAAOP46952 286 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 ARL16Q0P5N6 197 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 RNF122Q9H9V4 155 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 DUX4Q9UBX2 424 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 PCNX2A6NKB5 2137 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 K7N7A8 449 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 JTBO76095 146 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 GUCA1AP43080 201 aaPredicted RBP9.16□□□□□ -0.94
USP28-201ENST00000003302 MRPS34P82930 218 aaKnown RBP9.16□□□□□ -0.94
USP28-201ENST00000003302 SPIN3Q5JUX0 258 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 OR5C1Q8NGR4 320 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 SIGLEC12Q96PQ1 595 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 FOXB1Q99853 325 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 OR2H1Q9GZK4 316 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 BIN3Q9NQY0 253 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 HMGB3O15347 200 aaKnown RBP9.16□□□□□ -0.94
USP28-201ENST00000003302 SCGNO76038 276 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 AGAP20933 346 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 PTAFRP25105 342 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 P2RY1P47900 373 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 PAX9P55771 341 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 UNQ6494/PRO21346Q6UXR6 183 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 RDH5Q92781 318 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 RSG1Q9BU20 258 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 ABCA1O95477 2261 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 LOC102725191A0A1B0GVB3 256 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 IFNL4K9M1U5 179 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 HS3ST1O14792 307 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 RRP8O43159 456 aaKnown RBP9.16□□□□□ -0.94
USP28-201ENST00000003302 PPIHO43447 177 aaKnown RBP9.16□□□□□ -0.94
USP28-201ENST00000003302 CXCL12P48061 93 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 FGF8P55075 233 aaPredicted RBP9.16□□□□□ -0.94
USP28-201ENST00000003302 RND3P61587 244 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 CYB561D1Q8N8Q1 229 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 OR51H1Q8NH63 302 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 NECAP2Q9NVZ3 263 aa9.16□□□□□ -0.94
USP28-201ENST00000003302 H7C1Q1 480 aa9.15□□□□□ -0.94
USP28-201ENST00000003302 MMP7P09237 267 aaPredicted RBP9.15□□□□□ -0.94
USP28-201ENST00000003302 RBM11P57052 281 aaKnown RBP9.15□□□□□ -0.94
USP28-201ENST00000003302 TMEM42Q69YG0 159 aa9.15□□□□□ -0.94
USP28-201ENST00000003302 SPNS3Q6ZMD2 512 aa9.15□□□□□ -0.94
USP28-201ENST00000003302 AGBL5Q8NDL9 886 aa9.15□□□□□ -0.94
USP28-201ENST00000003302 YPEL4Q96NS1 127 aa9.15□□□□□ -0.94
USP28-201ENST00000003302 PKDREJQ9NTG1 2253 aa9.15□□□□□ -0.94
USP28-201ENST00000003302 A0A1W2PNU3 283 aaPredicted RBP9.15□□□□□ -0.94
USP28-201ENST00000003302 ZNF806P0C7X5 589 aa9.15□□□□□ -0.94
USP28-201ENST00000003302 DYNLT3P51808 116 aa9.15□□□□□ -0.94
USP28-201ENST00000003302 DSCR4P56555 118 aaPredicted RBP9.15□□□□□ -0.94
USP28-201ENST00000003302 CARD18P57730 90 aa9.15□□□□□ -0.94
USP28-201ENST00000003302 TMEM267Q0VDI3 215 aaPredicted RBP9.15□□□□□ -0.94
USP28-201ENST00000003302 Q6ZSR3 168 aa9.15□□□□□ -0.94
USP28-201ENST00000003302 AAED1Q7RTV5 226 aa9.15□□□□□ -0.94
USP28-201ENST00000003302 MOB3AQ96BX8 217 aa9.15□□□□□ -0.94
USP28-201ENST00000003302 GALNT14Q96FL9 552 aa9.15□□□□□ -0.94
USP28-201ENST00000003302 TAAR3PQ9P1P4 343 aa9.15□□□□□ -0.94
USP28-201ENST00000003302 TPRP12270 2363 aaKnown RBP9.15□□□□□ -0.94
USP28-201ENST00000003302 C3orf85A0A1B0GTC6 90 aa9.15□□□□□ -0.95
USP28-201ENST00000003302 IGHV2-5P01817 119 aa9.15□□□□□ -0.95
USP28-201ENST00000003302 CD55P08174 381 aa9.15□□□□□ -0.95
USP28-201ENST00000003302 RAB5AP20339 215 aa9.15□□□□□ -0.95
USP28-201ENST00000003302 SSR4P51571 173 aa9.15□□□□□ -0.95
USP28-201ENST00000003302 PRSS8Q16651 343 aa9.15□□□□□ -0.95
USP28-201ENST00000003302 OPN5Q6U736 354 aa9.15□□□□□ -0.95
USP28-201ENST00000003302 TMPRSS7Q7RTY8 843 aa9.15□□□□□ -0.95
USP28-201ENST00000003302 GINS3Q9BRX5 216 aa9.15□□□□□ -0.95
USP28-201ENST00000003302 CALHM2Q9HA72 323 aa9.15□□□□□ -0.95
USP28-201ENST00000003302 PLA2G3Q9NZ20 509 aa9.15□□□□□ -0.95
USP28-201ENST00000003302 OR1A1Q9P1Q5 309 aa9.15□□□□□ -0.95
USP28-201ENST00000003302 SLC7A11Q9UPY5 501 aa9.15□□□□□ -0.95
USP28-201ENST00000003302 LOC102723996A0A087X1L8 192 aa9.14□□□□□ -0.95
USP28-201ENST00000003302 TGIF2-C20orf24A0A0A6YYL0 155 aa9.14□□□□□ -0.95
USP28-201ENST00000003302 SLC22A20A6NK97 555 aa9.14□□□□□ -0.95
USP28-201ENST00000003302 MPPED1O15442 326 aa9.14□□□□□ -0.95
USP28-201ENST00000003302 EIF1P41567 113 aaKnown RBP9.14□□□□□ -0.95
USP28-201ENST00000003302 ZNF133P52736 654 aaPredicted RBP9.14□□□□□ -0.95
USP28-201ENST00000003302 GPR137CQ8N3F9 429 aa9.14□□□□□ -0.95
USP28-201ENST00000003302 ADGRG7Q96K78 797 aa9.14□□□□□ -0.95
USP28-201ENST00000003302 TLX3O43711 291 aaPredicted RBP9.14□□□□□ -0.95
USP28-201ENST00000003302 GAPDHP04406 335 aaKnown RBP9.14□□□□□ -0.95
USP28-201ENST00000003302 STARD6P59095 220 aa9.14□□□□□ -0.95
USP28-201ENST00000003302 RAC1P63000 192 aa9.14□□□□□ -0.95
USP28-201ENST00000003302 TMEM252Q8N6L7 170 aa9.14□□□□□ -0.95
USP28-201ENST00000003302 EXTL1Q92935 676 aa9.14□□□□□ -0.95
USP28-201ENST00000003302 SPTSSAQ969W0 71 aa9.14□□□□□ -0.95
USP28-201ENST00000003302 SMCO4Q9NRQ5 59 aa9.14□□□□□ -0.95
USP28-201ENST00000003302 MIOXQ9UGB7 285 aa9.14□□□□□ -0.95
USP28-201ENST00000003302 INTS1Q8N201 2190 aaKnown RBP9.14□□□□□ -0.95
USP28-201ENST00000003302 TNRC6AQ8NDV7 1962 aaKnown RBP9.14□□□□□ -0.95
USP28-201ENST00000003302 C5orf49A4QMS7 147 aa9.14□□□□□ -0.95
USP28-201ENST00000003302 E5RGE8 158 aa9.14□□□□□ -0.95
USP28-201ENST00000003302 IFNA21P01568 189 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms