RNA–Protein interactions for RNA: YMR039C

SUB1, Transcript of Transcriptional coactivator, yeast

Gene SUB1, Length 879 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SUB1	YMR039C	PEX2	P32800	271 aa		4.72	□□□□□ -1.65
SUB1	YMR039C	RET2	P43621	546 aa		4.72	□□□□□ -1.65
SUB1	YMR039C	BIT61	P47041	543 aa		4.72	□□□□□ -1.65
SUB1	YMR039C	UTP14	Q04500	899 aa	Known RBP	4.72	□□□□□ -1.65
SUB1	YMR039C	BMS1	Q08965	1183 aa	Known RBP	4.72	□□□□□ -1.65
SUB1	YMR039C	KIN82	P25341	720 aa		4.71	□□□□□ -1.66
SUB1	YMR039C	CTP1	P38152	299 aa		4.71	□□□□□ -1.66
SUB1	YMR039C	MUP3	P38734	546 aa		4.71	□□□□□ -1.66
SUB1	YMR039C	PAC2	P39937	518 aa		4.71	□□□□□ -1.66
SUB1	YMR039C	MPS3	P47069	682 aa		4.71	□□□□□ -1.66
SUB1	YMR039C	RFX1	P48743	811 aa		4.71	□□□□□ -1.66
SUB1	YMR039C	MRK1	P50873	501 aa		4.71	□□□□□ -1.66
SUB1	YMR039C	YDL086W	Q07505	273 aa		4.71	□□□□□ -1.66
SUB1	YMR039C	YNL162W-A	Q3E7A8	72 aa		4.71	□□□□□ -1.66
SUB1	YMR039C	CKB2	P38930	258 aa		4.7	□□□□□ -1.66
SUB1	YMR039C	YIL077C	P40508	320 aa		4.7	□□□□□ -1.66
SUB1	YMR039C	BFA1	P47113	574 aa		4.7	□□□□□ -1.66
SUB1	YMR039C	YMR210W	Q03649	449 aa		4.7	□□□□□ -1.66
SUB1	YMR039C	VBA4	Q04602	768 aa	Known RBP	4.7	□□□□□ -1.66
SUB1	YMR039C	YLR407W	Q06070	228 aa		4.7	□□□□□ -1.66
SUB1	YMR039C	YSH1	Q06224	779 aa	Predicted RBP	4.7	□□□□□ -1.66
SUB1	YMR039C	YFT2	Q06676	274 aa		4.7	□□□□□ -1.66
SUB1	YMR039C	SWI6	P09959	803 aa		4.69	□□□□□ -1.66
SUB1	YMR039C	SEC15	P22224	910 aa		4.69	□□□□□ -1.66
SUB1	YMR039C	NTH1	P32356	751 aa		4.69	□□□□□ -1.66
SUB1	YMR039C	MSS1	P32559	526 aa	Predicted RBP	4.69	□□□□□ -1.66
SUB1	YMR039C	YKU70	P32807	602 aa		4.69	□□□□□ -1.66
SUB1	YMR039C	COS111	P38308	924 aa		4.69	□□□□□ -1.66
SUB1	YMR039C	KSP1	P38691	1029 aa	Known RBP	4.69	□□□□□ -1.66
SUB1	YMR039C	TDA3	P38758	523 aa		4.69	□□□□□ -1.66
SUB1	YMR039C	YHR097C	P38809	366 aa	Known RBP	4.69	□□□□□ -1.66
SUB1	YMR039C	KHA1	P40309	873 aa		4.69	□□□□□ -1.66
SUB1	YMR039C	YJR096W	P47137	282 aa		4.69	□□□□□ -1.66
SUB1	YMR039C	IME1	P21190	360 aa		4.68	□□□□□ -1.66
SUB1	YMR039C	CCT5	P40413	562 aa	Known RBP	4.68	□□□□□ -1.66
SUB1	YMR039C	DNM1	P54861	757 aa		4.68	□□□□□ -1.66
SUB1	YMR039C	RCR2	Q03446	210 aa	Known RBP	4.68	□□□□□ -1.66
SUB1	YMR039C	ADR1	P07248	1323 aa		4.68	□□□□□ -1.66
SUB1	YMR039C	RPS9B	P05755	195 aa	Known RBP	4.67	□□□□□ -1.66
SUB1	YMR039C	PRP22	P24384	1145 aa	Known RBP	4.67	□□□□□ -1.66
SUB1	YMR039C	APL3	P38065	1025 aa		4.67	□□□□□ -1.66
SUB1	YMR039C	SPC98	P53540	846 aa		4.67	□□□□□ -1.66
SUB1	YMR039C	YMC2	P38087	329 aa		4.66	□□□□□ -1.66
SUB1	YMR039C	MIT1	P40002	666 aa		4.66	□□□□□ -1.66
SUB1	YMR039C	HLJ1	P48353	224 aa		4.66	□□□□□ -1.66
SUB1	YMR039C	NMA2	P53204	395 aa		4.66	□□□□□ -1.66
SUB1	YMR039C	YPS7	Q06325	596 aa		4.66	□□□□□ -1.66
SUB1	YMR039C	RKI1	Q12189	258 aa		4.66	□□□□□ -1.66
SUB1	YMR039C	LAM4	P38800	1345 aa		4.66	□□□□□ -1.66
SUB1	YMR039C	PRP19	P32523	503 aa	Known RBP	4.65	□□□□□ -1.67
SUB1	YMR039C	BUD8	P41698	603 aa		4.65	□□□□□ -1.67
SUB1	YMR039C	PXA1	P41909	870 aa		4.65	□□□□□ -1.67
SUB1	YMR039C	YGR153W	P48238	217 aa		4.65	□□□□□ -1.67
SUB1	YMR039C	PPN1	Q04119	674 aa		4.65	□□□□□ -1.67
SUB1	YMR039C	THI73	Q07904	523 aa		4.65	□□□□□ -1.67
SUB1	YMR039C	IZH3	Q07959	543 aa		4.65	□□□□□ -1.67
SUB1	YMR039C	AIM44	Q99299	758 aa		4.65	□□□□□ -1.67
SUB1	YMR039C	PHO5	P00635	467 aa		4.64	□□□□□ -1.67
SUB1	YMR039C	RPS17A	P02407	136 aa	Known RBP	4.64	□□□□□ -1.67
SUB1	YMR039C	RPS17B	P14127	136 aa	Known RBP	4.64	□□□□□ -1.67
SUB1	YMR039C	VPS34	P22543	875 aa		4.64	□□□□□ -1.67
SUB1	YMR039C	HXT6	P39003	570 aa	Known RBP	4.64	□□□□□ -1.67
SUB1	YMR039C	HXT7	P39004	570 aa		4.64	□□□□□ -1.67
SUB1	YMR039C	PMT6	P42934	759 aa		4.64	□□□□□ -1.67
SUB1	YMR039C	GZF3	P42944	551 aa	Known RBP	4.64	□□□□□ -1.67
SUB1	YMR039C	SPO1	P53541	631 aa		4.64	□□□□□ -1.67
SUB1	YMR039C	SNF12	P53628	566 aa		4.64	□□□□□ -1.67
SUB1	YMR039C	UFO1	Q04511	668 aa		4.64	□□□□□ -1.67
SUB1	YMR039C	MRI1	Q06489	411 aa	Known RBP	4.64	□□□□□ -1.67
SUB1	YMR039C	STP4	Q07351	490 aa		4.64	□□□□□ -1.67
SUB1	YMR039C	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	4.63	□□□□□ -1.67	not detected
SUB1	YMR039C	TYS1	P36421	394 aa	Known RBP	4.63	□□□□□ -1.67
SUB1	YMR039C	DIP5	P53388	608 aa		4.63	□□□□□ -1.67
SUB1	YMR039C	NOP15	P53927	220 aa	Predicted RBP	4.63	□□□□□ -1.67
SUB1	YMR039C	MTQ2	Q03920	221 aa	Predicted RBP	4.63	□□□□□ -1.67
SUB1	YMR039C	YDR179W-A	Q03983	463 aa		4.63	□□□□□ -1.67
SUB1	YMR039C	THI7	Q05998	598 aa		4.63	□□□□□ -1.67
SUB1	YMR039C	STE12	P13574	688 aa		4.62	□□□□□ -1.67
SUB1	YMR039C	RPA135	P22138	1203 aa	Known RBP	4.62	□□□□□ -1.67
SUB1	YMR039C	SAT4	P25333	603 aa	Known RBP	4.62	□□□□□ -1.67
SUB1	YMR039C	SEC65	P29478	273 aa		4.62	□□□□□ -1.67
SUB1	YMR039C	PMC1	P38929	1173 aa	Predicted RBP	4.62	□□□□□ -1.67
SUB1	YMR039C	IES1	P43579	692 aa		4.62	□□□□□ -1.67
SUB1	YMR039C	PMT3	P47190	753 aa		4.62	□□□□□ -1.67
SUB1	YMR039C	ECM9	Q02202	377 aa		4.62	□□□□□ -1.67
SUB1	YMR039C	FDC1	Q03034	503 aa		4.62	□□□□□ -1.67
SUB1	YMR039C	NGL2	Q03264	515 aa	Known RBP	4.62	□□□□□ -1.67
SUB1	YMR039C	NSE5	Q03718	556 aa		4.62	□□□□□ -1.67
SUB1	YMR039C	SLK19	Q08581	821 aa	Known RBP	4.62	□□□□□ -1.67
SUB1	YMR039C	RPS21B	Q3E754	87 aa	Known RBP	4.62	□□□□□ -1.67
SUB1	YMR039C	APM4	Q99186	491 aa		4.62	□□□□□ -1.67
SUB1	YMR039C	HOM2	P13663	365 aa	Known RBP	4.61	□□□□□ -1.67
SUB1	YMR039C	PRE4	P30657	266 aa		4.61	□□□□□ -1.67
SUB1	YMR039C	ORC2	P32833	620 aa		4.61	□□□□□ -1.67
SUB1	YMR039C	UGP1	P32861	499 aa	Known RBP	4.61	□□□□□ -1.67
SUB1	YMR039C	ELF1	P36053	145 aa		4.61	□□□□□ -1.67
SUB1	YMR039C	FPR3	P38911	411 aa	Known RBP	4.61	□□□□□ -1.67
SUB1	YMR039C	YJR142W	P47173	342 aa		4.61	□□□□□ -1.67
SUB1	YMR039C	ASN1	P49089	572 aa	Known RBP	4.61	□□□□□ -1.67
SUB1	YMR039C	YNR029C	P53729	429 aa	Known RBP	4.61	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 19.2 ms